GWAS755737_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS755737_H (platelet component distribution width QTL GWAS755737 (human)) Homo sapiens

Symbol: GWAS755737_H
Name: platelet component distribution width QTL GWAS755737 (human)
RGD ID: 407106761
Trait: platelet component distribution width
Measurement Type: platelet distribution width   (CMO:0001350)    
LOD Score: Not Available
P Value: 3.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386163,419,497 - 163,419,498RGD_MAPPER_PIPELINEGRCh38
GRCh376163,840,529 - 163,840,530RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS755737_HHumanplatelet distribution width  IAGPrs2784867405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS755737_HHumanplatelet component distribution width  IAGPrs2784867405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1319346QKIQKI, KH domain containing RNA binding6163414718163578592Human

Position Markers

Peak: (rs2784867)
Human AssemblyChrPosition (strand)Source
GRCh386163,419,497 - 163,419,498RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407106761GWAS755737_Hplatelet component distribution width QTL GWAS755737 (human)3e-14platelet component distribution widthplatelet distribution width (CMO:0001350)6163419497163419498Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS755737_H GCST90002401 Platelet distribution width 408,112 British individuals G 0.339151 3E-14 13.523 rs2784867 0.018028786 platelet component distribution width (EFO:0007984)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002401 GWAS Catalog

RGD Curation Notes
Note Type Note Reference