GWAS755326_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS755326_H (body height QTL GWAS755326 (human)) Homo sapiens

Symbol: GWAS755326_H
Name: body height QTL GWAS755326 (human)
RGD ID: 407106350
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382041,404,479 - 41,404,480RGD_MAPPER_PIPELINEGRCh38
GRCh372040,033,119 - 40,033,120RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS755326_HHumanbody height  IAGPrs80216136405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS755326_HHumanbody height  IAGPrs80216136405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS755326_HHumanbody height  IAGPrs80216136405850206 GWAS_CATALOGPMID:30595370
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321381CHD6chromodomain helicase DNA binding protein 6204140208341618377Human

Position Markers

Peak: (rs80216136)
Human AssemblyChrPosition (strand)Source
GRCh382041,404,479 - 41,404,480RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
407106350GWAS755326_Hbody height QTL GWAS755326 (human)9e-10body height (VT:0001253)body height (CMO:0000106)204140447941404480Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS755326_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 9E-10 9.046 rs80216136 N/A body height (EFO:0004339)
 PMID:30595370
Database Acc Id Source(s)
GWAS Catalog GCST007841 GWAS Catalog

RGD Curation Notes
Note Type Note Reference