GWAS746744_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS746744_H (triglycerides to total lipids in large VLDL percentage QTL GWAS746744 (human)) Homo sapiens

Symbol: GWAS746744_H
Name: triglycerides to total lipids in large VLDL percentage QTL GWAS746744 (human)
RGD ID: 407097768
Trait: triglycerides to total lipids in large VLDL percentage
LOD Score: Not Available
P Value: 7.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387993,169 - 993,170RGD_MAPPER_PIPELINEGRCh38
GRCh3771,032,805 - 1,032,806RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS746744_HHumantriglycerides to total lipids in large VLDL percentage  IAGPrs1007765405850206 GWAS_CATALOGPMID:36764567
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603950CHLSNcholesin79779641138257Human

Position Markers

Peak: (rs1007765)
Human AssemblyChrPosition (strand)Source
GRCh387993,169 - 993,170RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407139844GWAS788820_Hphospholipids in very large HDL measurement QTL GWAS788820 (human)2e-12phospholipids in very large HDL measurement 7993169993170Human
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
1643247BW130_HBody Weight QTL 130 (human)1.280.008Body weightbody mass index7117453493Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human
407097768GWAS746744_Htriglycerides to total lipids in large VLDL percentage QTL GWAS746744 (human)7e-11triglycerides to total lipids in large VLDL percentage 7993169993170Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS746744_H GCST90269690 Triglycerides to total lipids in large VLDL percentage (UKB data field 23593) 88,321 European ancestry individuals C 0.207508 7E-11 10.155 rs1007765 0.037952 triglycerides to total lipids in large VLDL percentage (EFO:0022332)
 PMID:36764567
GWAS788820_H GCST90302134 Phospholipids in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.2196 2E-12 11.699 rs1007765 0.0348 phospholipids in very large HDL measurement (EFO:0022298)
 PMID:38448586
Database Acc Id Source(s)
GWAS Catalog GCST90269690 GWAS Catalog

RGD Curation Notes
Note Type Note Reference