GWAS744315_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS744315_H (ceramide measurement QTL GWAS744315 (human)) Homo sapiens

Symbol: GWAS744315_H
Name: ceramide measurement QTL GWAS744315 (human)
RGD ID: 407095339
Trait: ceramide measurement
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381524,397,314 - 24,397,315RGD_MAPPER_PIPELINEGRCh38
GRCh371524,642,461 - 24,642,462RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS744315_HHumanceramide measurement  IAGPrs528785443405850206 GWAS_CATALOGPMID:31628463
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38616745LOC105370733uncharacterized LOC105370733152410168024542421Human

Position Markers

Peak: (rs528785443)
Human AssemblyChrPosition (strand)Source
GRCh381524,397,314 - 24,397,315RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
407095339GWAS744315_Hceramide measurement QTL GWAS744315 (human)7e-09ceramide measurement152439731424397315Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS744315_H GCST009698 Metabolite levels 1,954 Chinese ancestry individuals C 0.9963 7E-9 8.155 rs528785443 0.9446 ceramide measurement (EFO:0010222)
 PMID:31628463
Database Acc Id Source(s)
GWAS Catalog GCST009698 GWAS Catalog

RGD Curation Notes
Note Type Note Reference