GWAS742225_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS742225_H (sensory perception of taste QTL GWAS742225 (human)) Homo sapiens

Symbol: GWAS742225_H
Name: sensory perception of taste QTL GWAS742225 (human)
RGD ID: 407093249
Trait: sensory perception of taste
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384139,545,450 - 139,545,451RGD_MAPPER_PIPELINEGRCh38
GRCh374140,466,604 - 140,466,605RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS742225_HHumansensory perception of taste  IAGPrs6828434405850206 GWAS_CATALOGPMID:31005965
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606498SETD7SET domain containing 7, histone lysine methyltransferase4139492974139556219Human

Position Markers

Peak: (rs6828434)
Human AssemblyChrPosition (strand)Source
GRCh384139,545,450 - 139,545,451RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407093249GWAS742225_Hsensory perception of taste QTL GWAS742225 (human)0.000004sensory perception of taste4139545450139545451Human
407267472GWAS916448_Hamino acid measurement QTL GWAS916448 (human)0.000001amino acid measurement4139545450139545451Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS742225_H GCST008024 Salty taste perception in obesity with metabolic syndrome 378 individuals T 0.309 0.000004 5.398 rs6828434 0.541 sensory perception of taste (GO:0050909)
 PMID:31005965
GWAS916448_H GCST90133555 Glutarylcarnitine (C5-DC) levels in elite athletes 490 individuals ? NR 0.000001 6 rs6828434 0.3347411 amino acid measurement (EFO:0005134)
 PMID:31882771
Database Acc Id Source(s)
GWAS Catalog GCST008024 GWAS Catalog

RGD Curation Notes
Note Type Note Reference