GWAS738337_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS738337_H (ankle injury QTL GWAS738337 (human)) Homo sapiens

Symbol: GWAS738337_H
Name: ankle injury QTL GWAS738337 (human)
RGD ID: 407089361
Trait: ankle injury
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385120,487,660 - 120,487,661RGD_MAPPER_PIPELINEGRCh38
GRCh375119,823,355 - 119,823,356RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS738337_HHumanankle injury  IAGPrs4340940405850206 GWAS_CATALOGPMID:28957384
Disease Annotations     Click to see Annotation Detail View
Ankle Injuries  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602486PRR16proline rich 165120464278120794594Human

Position Markers

Peak: (rs4340940)
Human AssemblyChrPosition (strand)Source
GRCh385120,487,660 - 120,487,661RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407089361GWAS738337_Hankle injury QTL GWAS738337 (human)0.000007ankle injury5120487660120487661Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS738337_H GCST004952 Ankle injury 1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls A NR 0.000007 5.155 rs4340940 1.807 ankle injury (EFO:1002021)
 PMID:28957384
Database Acc Id Source(s)
GWAS Catalog GCST004952 GWAS Catalog

RGD Curation Notes
Note Type Note Reference