GWAS736442_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS736442_H (breast carcinoma QTL GWAS736442 (human)) Homo sapiens

Symbol: GWAS736442_H
Name: breast carcinoma QTL GWAS736442 (human)
RGD ID: 407087466
Trait: breast carcinoma
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38792,001,306 - 92,001,307RGD_MAPPER_PIPELINEGRCh38
GRCh37791,630,620 - 91,630,621RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349720AKAP9A-kinase anchoring protein 979194086292110673Human

Position Markers

Peak: (rs6964587)
Human AssemblyChrPosition (strand)Source
GRCh38792,001,306 - 92,001,307RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406890243GWAS539219_Hbreast carcinoma QTL GWAS539219 (human)9e-11breast carcinoma79200130692001307Human
407151009GWAS799985_Hbreast carcinoma QTL GWAS799985 (human)3e-12breast carcinoma79200130692001307Human
407087466GWAS736442_Hbreast carcinoma QTL GWAS736442 (human)0.000001breast carcinoma79200130692001307Human
407089374GWAS738350_Hbreast carcinoma QTL GWAS738350 (human)0.0000005breast carcinoma79200130692001307Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS539219_H GCST004988 Breast cancer 76,192 European ancestry cases, 63,082 European ancestry controls T 0.39 9E-11 10.046 rs6964587 1.03 breast carcinoma (EFO:0000305)
 PMID:29059683
GWAS736442_H GCST007236 Breast cancer 46,785 European ancestry cases, 42,892 European ancestry controls T 0.39 0.000001 6 rs6964587 1.05 breast carcinoma (EFO:0000305)
 PMID:25751625
GWAS738350_H GCST004950 Breast cancer 15,748 European ancestry cases, 18,084 European ancestry controls T 0.39 5E-7 6.302 rs6964587 1.05 breast carcinoma (EFO:0000305)
 PMID:25751625
GWAS799985_H GCST90090980 Breast cancer 24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls T NR 3E-12 11.523 rs6964587 1.04 breast carcinoma (EFO:0000305)
 PMID:32139696
Database Acc Id Source(s)
GWAS Catalog GCST007236 GWAS Catalog

RGD Curation Notes
Note Type Note Reference