GWAS733350_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS733350_H (phospholipids:total lipids ratio QTL GWAS733350 (human)) Homo sapiens

Symbol: GWAS733350_H
Name: phospholipids:total lipids ratio QTL GWAS733350 (human)
RGD ID: 407084374
Trait: phospholipids:total lipids ratio
LOD Score: Not Available
P Value: 3.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38312,164,989 - 12,164,990RGD_MAPPER_PIPELINEGRCh38
GRCh37312,206,489 - 12,206,490RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS733350_HHumanphospholipids:total lipids ratio  IAGPrs11922042405850206 GWAS_CATALOGPMID:36764567
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736267SYN2synapsin II31200438812192032Human

Position Markers

Peak: (rs11922042)
Human AssemblyChrPosition (strand)Source
GRCh38312,164,989 - 12,164,990RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407192231GWAS841207_Hphospholipids:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS841207 (human)9e-14phospholipids:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407317731GWAS966707_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS966707 (human)1e-12total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407266560GWAS915536_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS915536 (human)2e-10total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407097935GWAS746911_Hcholesteryl ester measurement QTL GWAS746911 (human)1e-11blood lipid amount (VT:0003949)31216498912164990Human
407166506GWAS815482_Hhigh density lipoprotein cholesterol measurement QTL GWAS815482 (human)4e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407024658GWAS673634_Hcholesteryl esters to total lipids in large HDL percentage QTL GWAS673634 (human)2e-11cholesterol in large HDL measurement 31216498912164990Human
407195381GWAS844357_Hcholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS844357 (human)9e-13cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407086167GWAS735143_Hphospholipids:total lipids ratio QTL GWAS735143 (human)7e-10phospholipids:total lipids ratio31216498912164990Human
407197296GWAS846272_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS846272 (human)1e-08high density lipoprotein particle size measurementblood high density lipoprotein particle diameter (CMO:0002692)31216498912164990Human
407084374GWAS733350_Hphospholipids:total lipids ratio QTL GWAS733350 (human)3e-13phospholipids:total lipids ratio31216498912164990Human
407277584GWAS926560_Hphospholipids:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS926560 (human)2e-08phospholipids:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407026298GWAS675274_Hcholesterol to total lipids in large HDL percentage QTL GWAS675274 (human)7e-13cholesterol to total lipids in large HDL percentage 31216498912164990Human
407093243GWAS742219_Hfree cholesterol to total lipids in very large HDL percentage QTL GWAS742219 (human)4e-11free cholesterol to total lipids in very large HDL percentage 31216498912164990Human
407342815GWAS991791_Hcholesteryl ester measurement, high density lipoprotein cholesterol measurement QTL GWAS991791 (human)4e-13blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407165981GWAS814957_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS814957 (human)2e-09free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407345470GWAS994446_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS994446 (human)7e-12lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407167326GWAS816302_Hcholesteryl ester measurement, high density lipoprotein cholesterol measurement QTL GWAS816302 (human)1e-10blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human
407196057GWAS845033_Hcholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS845033 (human)5e-11phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)31216498912164990Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS673634_H GCST90269733 Cholesteryl esters to total lipids in large HDL percentage (UKB data field 23636) 88,329 European ancestry individuals C 0.0172544 2E-11 10.699 rs11922042 0.125375 cholesteryl esters to total lipids in large HDL percentage (EFO:0022248)
 PMID:36764567
GWAS675274_H GCST90269732 Cholesterol to total lipids in large HDL percentage (UKB data field 23635) 88,329 European ancestry individuals C 0.0172544 7E-13 12.155 rs11922042 0.133032 cholesterol to total lipids in large HDL percentage (EFO:0022234)
 PMID:36764567
GWAS733350_H GCST90269731 Phospholipids to total lipids in large HDL percentage (UKB data field 23634) 88,329 European ancestry individuals C 0.0172544 3E-13 12.523 rs11922042 0.138365 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS735143_H GCST90269736 Phospholipids to total lipids in medium HDL percentage (UKB data field 23639) 88,329 European ancestry individuals C 0.0172544 7E-10 9.155 rs11922042 0.115015 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS742219_H GCST90269729 Free cholesterol to total lipids in very large HDL percentage (UKB data field 23632) 88,307 European ancestry individuals C 0.0172474 4E-11 10.398 rs11922042 0.115648 free cholesterol to total lipids in very large HDL percentage (EFO:0022288)
 PMID:36764567
None Available GCST90269658 Cholesterol in large HDL (UKB data field 23561) 88,329 European ancestry individuals C 0.0172544 2E-11 10.699 rs11922042 0.11667 cholesterol in large HDL measurement (EFO:0021900)
 PMID:36764567
GWAS746911_H GCST90269659 Cholesteryl esters in large HDL (UKB data field 23562) 88,329 European ancestry individuals C 0.0172544 1E-11 11 rs11922042 0.11875 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS814957_H GCST90092848 Free cholesterol levels in large HDL 115,082 European ancestry individuals T 0.982793 2E-9 8.699 rs11922042 0.0897512 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS815482_H GCST90092851 Concentration of large HDL particles 115,082 European ancestry individuals T 0.982793 4E-10 9.398 rs11922042 0.0934254 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS816302_H GCST90092846 Cholesteryl ester levels in large HDL 115,082 European ancestry individuals T 0.982793 1E-10 10 rs11922042 0.097305 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS841207_H GCST90092853 Phospholipids to total lipids ratio in large HDL 115,082 European ancestry individuals T 0.982793 9E-14 13.046 rs11922042 0.122799 phospholipids:total lipids ratio (EFO:0020946)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS844357_H GCST90092845 Cholesterol to total lipids ratio in large HDL 115,082 European ancestry individuals T 0.982793 9E-13 12.046 rs11922042 0.114427 cholesterol:total lipids ratio (EFO:0020943)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS845033_H GCST90092847 Cholesteryl esters to total lipids ratio in large HDL 115,082 European ancestry individuals T 0.982793 5E-11 10.302 rs11922042 0.106585 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS846272_H GCST90092850 Total lipid levels in large HDL 115,082 European ancestry individuals T 0.982793 1E-8 8 rs11922042 0.0851654 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS915536_H GCST90092844 Cholesterol levels in large HDL 115,082 European ancestry individuals T 0.982793 2E-10 9.699 rs11922042 0.0959121 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092828 Average diameter for HDL particles 115,082 European ancestry individuals T 0.982793 1E-8 8 rs11922042 0.086613 high density lipoprotein particle size measurement (EFO:0008592)
 PMID:35213538
GWAS926560_H GCST90092901 Phospholipids to total lipids ratio in medium HDL 115,082 European ancestry individuals T 0.982793 2E-8 7.699 rs11922042 0.09109 phospholipids:total lipids ratio (EFO:0020946)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS966707_H GCST90093004 Cholesterol levels in very large HDL 115,082 European ancestry individuals T 0.982793 1E-12 12 rs11922042 0.109755 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90093009 Free cholesterol to total lipids ratio in very large HDL 115,056 European ancestry individuals T 0.982798 1E-10 10 rs11922042 0.0968038 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS991791_H GCST90093006 Cholesteryl ester levels in very large HDL 115,082 European ancestry individuals T 0.982793 4E-13 12.398 rs11922042 0.111025 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90093012 Phospholipid levels in very large HDL 115,082 European ancestry individuals T 0.982793 5E-11 10.302 rs11922042 0.100676 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS994446_H GCST90093010 Total lipid levels in very large HDL 115,082 European ancestry individuals T 0.982793 7E-12 11.155 rs11922042 0.105194 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90269731 GWAS Catalog

RGD Curation Notes
Note Type Note Reference