GWAS728509_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS728509_H (clopidogrel metabolite measurement QTL GWAS728509 (human)) Homo sapiens

Symbol: GWAS728509_H
Name: clopidogrel metabolite measurement QTL GWAS728509 (human)
RGD ID: 407079533
Trait: clopidogrel metabolite measurement
LOD Score: Not Available
P Value: 3.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381735,938,396 - 35,938,397RGD_MAPPER_PIPELINEGRCh38
GRCh371734,265,400 - 34,265,401RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS728509_HHumanclopidogrel metabolite measurement  IAGPrs187439464405850206 GWAS_CATALOGPMID:28207573
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1342780LYZL6lysozyme like 6173593451835943713Human

Position Markers

Peak: (rs187439464)
Human AssemblyChrPosition (strand)Source
GRCh381735,938,396 - 35,938,397RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human
407079533GWAS728509_Hclopidogrel metabolite measurement QTL GWAS728509 (human)0.0000003clopidogrel metabolite measurement173593839635938397Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS728509_H GCST004264 Clopidogrel active metabolite levels 513 Amish individuals T 0.06 3E-7 6.523 rs187439464 7.33 clopidogrel metabolite measurement (EFO:0007966)
 PMID:28207573
Database Acc Id Source(s)
GWAS Catalog GCST004264 GWAS Catalog

RGD Curation Notes
Note Type Note Reference