GWAS727541_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS727541_H (post-traumatic stress disorder QTL GWAS727541 (human)) Homo sapiens

Symbol: GWAS727541_H
Name: post-traumatic stress disorder QTL GWAS727541 (human)
RGD ID: 407078565
Trait: post-traumatic stress disorder
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,742,474 - 161,742,475RGD_MAPPER_PIPELINEGRCh38
GRCh376162,163,506 - 162,163,507RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
730938PRKNparkin RBR E3 ubiquitin protein ligase6161347417162727766Human

Position Markers

Peak: (rs9364611)
Human AssemblyChrPosition (strand)Source
GRCh386161,742,474 - 161,742,475RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407078565GWAS727541_Hpost-traumatic stress disorder QTL GWAS727541 (human)4e-08post-traumatic stress disorder6161742474161742475Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS727541_H GCST009315 Post-traumatic stress disorder 23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls C NR 4E-8 7.398 rs9364611 1.1363636 post-traumatic stress disorder (EFO:0001358)
 PMID:31594949
Database Acc Id Source(s)
GWAS Catalog GCST009315 GWAS Catalog

RGD Curation Notes
Note Type Note Reference