GWAS725836_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS725836_H (diffuse large B-cell lymphoma, multiple sclerosis QTL GWAS725836 (human)) Homo sapiens

Symbol: GWAS725836_H
Name: diffuse large B-cell lymphoma, multiple sclerosis QTL GWAS725836 (human)
RGD ID: 407076860
Trait: diffuse large B-cell lymphoma, multiple sclerosis
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381192,571,891 - 192,571,892RGD_MAPPER_PIPELINEGRCh38
GRCh371192,541,021 - 192,541,022RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS725836_HHumandiffuse large B-cell lymphoma  IAGPrs1323292405850206 GWAS_CATALOGPMID:31407831
GWAS725836_HHumanmultiple sclerosis  IAGPrs1323292405850206 GWAS_CATALOGPMID:31407831
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
16570676AL390957.1novel transcript1192513113192629033Human

Position Markers

Peak: (rs1323292)
Human AssemblyChrPosition (strand)Source
GRCh381192,571,891 - 192,571,892RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406911653GWAS560629_Hmultiple sclerosis QTL GWAS560629 (human)2e-08marginal zone B-cell lymphoma, multiple sclerosis1192571891192571892Human
407382293GWAS1031269_Hmultiple sclerosis QTL GWAS1031269 (human)4e-33multiple sclerosis1192571891192571892Human
407076860GWAS725836_Hdiffuse large B-cell lymphoma, multiple sclerosis QTL GWAS725836 (human)5e-08diffuse large B-cell lymphoma, multiple sclerosis1192571891192571892Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS560629_H GCST001198 Multiple sclerosis 9,772 European ancestry cases, 16,849 European ancestry controls A NR 2E-8 7.699 rs1323292 1.12 PMID:21833088
None Available GCST008723 Marginal zone lymphoma or multiple sclerosis 741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls ? NR 2E-8 7.699 rs1323292 1.1227125 marginal zone B-cell lymphoma (EFO:1000630)
 PMID:31407831
GWAS725836_H GCST008722 Diffuse large B-cell lymphoma or multiple sclerosis 3,617 European ancestry diffuse large B-cell lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 24,813 European ancestry controls ? NR 5E-8 7.302 rs1323292 1.1111112 diffuse large B-cell lymphoma (EFO:0000403)
 PMID:31407831
GWAS1031269_H GCST009597 Multiple sclerosis 14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls A NR 4E-33 32.398 rs1323292 1.1625 PMID:31604244
Database Acc Id Source(s)
GWAS Catalog GCST008722 GWAS Catalog

RGD Curation Notes
Note Type Note Reference