GWAS722083_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS722083_H (birth weight, pelvic organ prolapse QTL GWAS722083 (human)) Homo sapiens

Symbol: GWAS722083_H
Name: birth weight, pelvic organ prolapse QTL GWAS722083 (human)
RGD ID: 407073107
Trait: birth weight, pelvic organ prolapse
Measurement Type: neonatal body weight   (CMO:0002079)    
LOD Score: Not Available
P Value: 5.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386112,251,159 - 112,251,160RGD_MAPPER_PIPELINEGRCh38
GRCh376112,572,361 - 112,572,362RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1320894LAMA4laminin subunit alpha 46112107931112254985Human
14700860LAMA4-AS1LAMA4 antisense RNA 16112236596112306683Human

Position Markers

Peak: (rs17757451)
Human AssemblyChrPosition (strand)Source
GRCh386112,251,159 - 112,251,160RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407073107GWAS722083_Hbirth weight, pelvic organ prolapse QTL GWAS722083 (human)0.0000005birth weight, pelvic organ prolapseneonatal body weight (CMO:0002079)6112251159112251160Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS722083_H GCST90277421 Pelvic organ prolapse x maximum birth weight interaction 608 Han Chinese ancestry females ? NR 5E-7 6.302 rs17757451 5.02 birth weight (EFO:0004344)
pelvic organ prolapse (EFO:0004710)
 PMID:37040585
Database Acc Id Source(s)
GWAS Catalog GCST90277421 GWAS Catalog

RGD Curation Notes
Note Type Note Reference