GWAS714159_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS714159_H (X-17653 measurement QTL GWAS714159 (human)) Homo sapiens

Symbol: GWAS714159_H
Name: X-17653 measurement QTL GWAS714159 (human)
RGD ID: 407065183
Trait: X-17653 measurement
LOD Score: Not Available
P Value: 1.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381473,592,746 - 73,592,747RGD_MAPPER_PIPELINEGRCh38
GRCh371474,059,450 - 74,059,451RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS714159_HHumanX-17653 measurement  IAGPrs11159028405850206 GWAS_CATALOGPMID:37277652
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602622HEATR4HEAT repeat containing 4147347848473633814Human
1605006ACOT4acyl-CoA thioesterase 4147359187373595766Human

Position Markers

Peak: (rs11159028)
Human AssemblyChrPosition (strand)Source
GRCh381473,592,746 - 73,592,747RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407004131GWAS653107_Hmetabolite measurement QTL GWAS653107 (human)3e-138metabolite measurement147359274673592747Human
407094976GWAS743952_Hvanillylmandelate (VMA) measurement QTL GWAS743952 (human)5e-12vanillylmandelate (VMA) measurement147359274673592747Human
407094151GWAS743127_HX-16935 measurement QTL GWAS743127 (human)1e-217X-16935 measurement147359274673592747Human
407077893GWAS726869_HX-24309 measurement QTL GWAS726869 (human)1e-865X-24309 measurement147359274673592747Human
407065183GWAS714159_HX-17653 measurement QTL GWAS714159 (human)1e-25X-17653 measurement147359274673592747Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS653107_H GCST90266672 Urine X-24330 levels in chronic kidney disease 4,876 European ancestry individuals A 0.22 3E-138 137.523 rs11159028 0.585 metabolite measurement (EFO:0004725)
 PMID:37277652
GWAS714159_H GCST90266416 Plasma X-17653 levels in chronic kidney disease 4,721 European ancestry individuals A 0.23 1E-25 25 rs11159028 0.177 X-17653 measurement (EFO:0800783)
 PMID:37277652
GWAS726869_H GCST90245747 X-24309 levels 14,296 European ancestry individuals A 0.2197 1E-865 865 rs11159028 0.7622331 X-24309 measurement (EFO:0800872)
 PMID:36357675
GWAS743127_H GCST90245612 X-16935 levels 14,296 European ancestry individuals A 0.2156 1E-217 217 rs11159028 0.41633412 X-16935 measurement (EFO:0800763)
 PMID:36357675
GWAS743952_H GCST90245477 Vanillylmandelate (VMA) levels 14,296 European ancestry individuals A 0.2211 5E-12 11.302 rs11159028 0.084526844 vanillylmandelate (VMA) measurement (EFO:0800119)
 PMID:36357675
Database Acc Id Source(s)
GWAS Catalog GCST90266416 GWAS Catalog

RGD Curation Notes
Note Type Note Reference