GWAS712498_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS712498_H (glomerular filtration rate, creatine measurement QTL GWAS712498 (human)) Homo sapiens

Symbol: GWAS712498_H
Name: glomerular filtration rate, creatine measurement QTL GWAS712498 (human)
RGD ID: 407063522
Trait: urine creatine amount   (VT:0010618)    
Measurement Type: glomerular filtration rate   (CMO:0000490)    
urine creatine level   (CMO:0002426)    
LOD Score: Not Available
P Value: 4.0E-30
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS712498_HHumanglomerular filtration rate  IAGPrs13329952405850206 GWAS_CATALOGPMID:33137338
GWAS712498_HHumanurine creatine level  IAGPrs13329952405850206 GWAS_CATALOGPMID:33137338

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS712498_HHumanurine creatine amount  IAGPrs13329952405850206 GWAS_CATALOGPMID:33137338

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs13329952) No map positions available.


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS663722_H GCST007929 Medication use (calcium channel blockers) 31,904 European ancestry cases, 172,474 European ancestry controls C 0.192068 4E-8 7.398 rs13329952 0.055942096 Calcium channel blocker use measurement (EFO:0009930)
 PMID:31015401
GWAS678753_H GCST003372 Glomerular filtration rate (creatinine) 133,413 European ancestry individuals T 0.81 9E-43 42.046 rs13329952 0.0158 creatinine measurement (EFO:0004518)
glomerular filtration rate (EFO:0005208)
 PMID:26831199
GWAS679273_H GCST011749 Estimated glomerular filtration rate (creatinine, Rapid3) 34,874 European, African American, Hispanic or South Asian cases, 107,090 European, African American, Hispanic or South Asian controls T 0.79 2E-17 16.699 rs13329952 1.101 glomerular filtration rate (EFO:0005208)
creatine measurement (EFO:0010472)
 PMID:33137338
GWAS680782_H GCST003374 Chronic kidney disease 12,385 European ancestry cases, 104,780 European ancestry controls T 0.81 2E-25 24.699 rs13329952 1.24 chronic kidney disease (EFO:0003884)
 PMID:26831199
GWAS684362_H GCST011119 Urate levels 454,183 European ancestry individuals T 0.81 3E-11 10.523 rs13329952 0.0156 urate measurement (EFO:0004531)
 PMID:33356394
GWAS712496_H GCST011747 Estimated glomerular filtration rate (creatinine, Rapid3) 31,101 European ancestry cases, 102,485 European ancestry controls T NR 1E-15 15 rs13329952 1.099 glomerular filtration rate (EFO:0005208)
creatine measurement (EFO:0010472)
 PMID:33137338
GWAS712498_H GCST011746 Estimated glomerular filtration rate (creatinine, CKDi25) 19,419 European ancestry cases, 169,087 European ancestry controls T NR 4E-30 29.398 rs13329952 1.21 glomerular filtration rate (EFO:0005208)
creatine measurement (EFO:0010472)
 PMID:33137338
GWAS742013_H GCST007344 Estimated glomerular filtration rate 134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals T 0.855 4E-20 19.398 rs13329952 0.339 glomerular filtration rate (EFO:0005208)
 PMID:30604766
GWAS982175_H GCST90132904 Diastolic blood pressure 526,001 European ancestry individuals T NR 3E-30 29.523 rs13329952 0.3026 diastolic blood pressure (EFO:0006336)
 PMID:35762941
Database Acc Id Source(s)
GWAS Catalog GCST011746 GWAS Catalog

RGD Curation Notes
Note Type Note Reference