GWAS705274_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS705274_H (body mass index QTL GWAS705274 (human)) Homo sapiens

Symbol: GWAS705274_H
Name: body mass index QTL GWAS705274 (human)
RGD ID: 407056298
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 7.0E-26
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38778,200,451 - 78,200,452RGD_MAPPER_PIPELINEGRCh38
GRCh37777,829,768 - 77,829,769RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS705274_HHumanbody mass index (BMI)  IAGPrs1852006405850206Based on the EFO term IDGWAS_CATALOGPMID:36581621

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS705274_HHumanbody mass index  IAGPrs1852006405850206 GWAS_CATALOGPMID:36581621
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735850MAGI2membrane associated guanylate kinase, WW and PDZ domain containing 277801705579453667Human
151674647LOC124901684uncharacterized LOC12490168477818518678215243Human

Position Markers

Peak: (rs1852006)
Human AssemblyChrPosition (strand)Source
GRCh38778,200,451 - 78,200,452RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406933682GWAS582658_Hbody mass index QTL GWAS582658 (human)8e-17body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human
406987974GWAS636950_Hbody height QTL GWAS636950 (human)7e-10body height (VT:0001253)body height (CMO:0000106)77820045178200452Human
407008421GWAS657397_Hbody mass index QTL GWAS657397 (human)2e-13body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human
407004714GWAS653690_Hbody mass index QTL GWAS653690 (human)0.0000005body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human
407056298GWAS705274_Hbody mass index QTL GWAS705274 (human)7e-26body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human
407079402GWAS728378_Hbody mass index QTL GWAS728378 (human)7e-18body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human
407125720GWAS774696_Hbody mass index QTL GWAS774696 (human)1e-13body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human
406991631GWAS640607_Hcomparative body size at age 10, self-reported QTL GWAS640607 (human)2e-09comparative body size at age 10, self-reported77820045178200452Human
407114266GWAS763242_Hbody mass index QTL GWAS763242 (human)3e-13body mass indexbody mass index (BMI) (CMO:0000105)77820045178200452Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS582658_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals A NR 8E-17 16.097 rs1852006 0.0146 body mass index (EFO:0004340)
 PMID:36376304
GWAS636950_H GCST010988 Adult body size 453,169 European ancestry individuals G 0.64299 7E-10 9.155 rs1852006 0.00883089 body height (EFO:0004339)
 PMID:32376654
GWAS640607_H GCST010989 Body size at age 10 453,169 European ancestry individuals G 0.64299 2E-9 8.699 rs1852006 0.00877312 comparative body size at age 10, self-reported (EFO:0009819)
 PMID:32376654
GWAS653690_H GCST90301649 Childhood body mass index 441,761 European ancestry individuals G NR 5E-7 6.302 rs1852006 0.0109968 body mass index (EFO:0004340)
 PMID:37280435
GWAS657397_H GCST009871 Body mass index 457,822 European ancestry individuals ? NR 2E-13 12.699 rs1852006 N/A body mass index (EFO:0004340)
 PMID:31669095
GWAS705274_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 7E-26 25.155 rs1852006 0.0166 body mass index (EFO:0004340)
 PMID:36581621
GWAS728378_H GCST009004 Body mass index 806,834 European ancestry individuals A 0.376 7E-18 17.155 rs1852006 0.0153 body mass index (EFO:0004340)
 PMID:30239722
None Available GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 1E-17 17 rs1852006 0.013852 metabolic syndrome (EFO:0000195)
 PMID:39349817
GWAS763242_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 3E-13 12.523 rs1852006 N/A body mass index (EFO:0004340)
 PMID:30595370
None Available GCST009001 Body mass index 374,756 European ancestry male individuals A 0.376 7E-18 17.155 rs1852006 0.0153 body mass index (EFO:0004340)
 PMID:30239722
GWAS774696_H GCST90301650 Body mass index 441,761 European ancestry individuals G NR 1E-13 13 rs1852006 0.0145301 body mass index (EFO:0004340)
 PMID:37280435
Database Acc Id Source(s)
GWAS Catalog GCST90255621 GWAS Catalog

RGD Curation Notes
Note Type Note Reference