GWAS703371_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS703371_H (mean arterial pressure, self reported educational attainment QTL GWAS703371 (human)) Homo sapiens

Symbol: GWAS703371_H
Name: mean arterial pressure, self reported educational attainment QTL GWAS703371 (human)
RGD ID: 407054395
Trait: mean arterial pressure, self reported educational attainment
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: 5.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38431,361,766 - 31,361,767RGD_MAPPER_PIPELINEGRCh38
GRCh37431,363,388 - 31,363,389RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS703371_HHumanmean arterial blood pressure  IAGPrs74458816405850206Based on the EFO term IDGWAS_CATALOGPMID:32372009

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS703371_HHumanmean arterial pressure  IAGPrs74458816405850206 GWAS_CATALOGPMID:32372009
GWAS703371_HHumanself reported educational attainment  IAGPrs74458816405850206 GWAS_CATALOGPMID:32372009
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs74458816)
Human AssemblyChrPosition (strand)Source
GRCh38431,361,766 - 31,361,767RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407054395GWAS703371_Hmean arterial pressure, self reported educational attainment QTL GWAS703371 (human)5e-09mean arterial pressure, self reported educational attainmentmean arterial blood pressure (CMO:0000009)43136176631361767Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS703371_H GCST010422 Mean arterial pressure x educational attainment (some college) interaction (2df) 27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education A NR 5E-9 8.302 rs74458816 3.33 mean arterial pressure (EFO:0006340)
self reported educational attainment (EFO:0004784)
 PMID:32372009
Database Acc Id Source(s)
GWAS Catalog GCST010422 GWAS Catalog

RGD Curation Notes
Note Type Note Reference