GWAS700739_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS700739_H (substance-related disorder QTL GWAS700739 (human)) Homo sapiens

Symbol: GWAS700739_H
Name: substance-related disorder QTL GWAS700739 (human)
RGD ID: 407051763
Trait: substance-related disorder
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38349,327,836 - 49,327,837RGD_MAPPER_PIPELINEGRCh38
GRCh37349,365,269 - 49,365,270RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS700739_HHumansubstance-related disorder  IAGPrs6795772405850206 GWAS_CATALOGPMID:37250466
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344173USP4ubiquitin specific peptidase 434927714449340053Human

Position Markers

Peak: (rs6795772)
Human AssemblyChrPosition (strand)Source
GRCh38349,327,836 - 49,327,837RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407051763GWAS700739_Hsubstance-related disorder QTL GWAS700739 (human)2e-09substance-related disorder34932783649327837Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS700739_H GCST90274724 Addiction risk factors 300,789 European ancestry problematic alcohol use individuals, 270,120 European ancestry problematic tobacco use individuals, 46,351 European ancestry cannabis use disorder individuals, 30,443 European ancestry opioid use disorder individuals C NR 2E-9 8.699 rs6795772 0.014 PMID:37250466
Database Acc Id Source(s)
GWAS Catalog GCST90274724 GWAS Catalog

RGD Curation Notes
Note Type Note Reference