GWAS698584_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS698584_H (phosphatidylcholine 38:3 measurement QTL GWAS698584 (human)) Homo sapiens

Symbol: GWAS698584_H
Name: phosphatidylcholine 38:3 measurement QTL GWAS698584 (human)
RGD ID: 407049608
Trait: glycerophosphocholine amount   (VT:0011004)    
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386160,014,897 - 160,014,898RGD_MAPPER_PIPELINEGRCh38
GRCh376160,435,929 - 160,435,930RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS698584_HHumanglycerophosphocholine amount  IAGPrs3798188405850206Based on the EFO term IDGWAS_CATALOGPMID:23823483

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS698584_HHumanphosphatidylcholine 38:3 measurement  IAGPrs3798188405850206 GWAS_CATALOGPMID:23823483
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
732660IGF2Rinsulin like growth factor 2 receptor6159969082160111504Human

Position Markers

Peak: (rs3798188)
Human AssemblyChrPosition (strand)Source
GRCh386160,014,897 - 160,014,898RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407049608GWAS698584_Hphosphatidylcholine 38:3 measurement QTL GWAS698584 (human)0.000008glycerophosphocholine amount (VT:0011004)6160014897160014898Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS698584_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000008 5.097 rs3798188 0.20887834 phosphatidylcholine 38:3 measurement (EFO:0010385)
 PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference