GWAS697416_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS697416_H (lysophosphatidylethanolamine 22:6 measurement QTL GWAS697416 (human)) Homo sapiens

Symbol: GWAS697416_H
Name: lysophosphatidylethanolamine 22:6 measurement QTL GWAS697416 (human)
RGD ID: 407048440
Trait: blood lipid amount   (VT:0003949)    
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382137,863,731 - 37,863,732RGD_MAPPER_PIPELINEGRCh38
GRCh372139,236,033 - 39,236,034RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS697416_HHumanblood lipid amount  IAGPrs2836026405850206Based on the EFO term IDGWAS_CATALOGPMID:23823483

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS697416_HHumanlysophosphatidylethanolamine 22:6 measurement  IAGPrs2836026405850206 GWAS_CATALOGPMID:23823483
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1313992KCNJ6potassium inwardly rectifying channel subfamily J member 6213760737337916457Human

Position Markers

Peak: (rs2836026)
Human AssemblyChrPosition (strand)Source
GRCh382137,863,731 - 37,863,732RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407050881GWAS699857_Hlysophosphatidylcholine 20:4 measurement QTL GWAS699857 (human)0.000005glycerophosphocholine amount (VT:0011004)213786373137863732Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human
407048440GWAS697416_Hlysophosphatidylethanolamine 22:6 measurement QTL GWAS697416 (human)0.0000004blood lipid amount (VT:0003949)213786373137863732Human
407048589GWAS697565_Hlysophosphatidylcholine 18:0 measurement QTL GWAS697565 (human)0.0000009glycerophosphocholine amount (VT:0011004)213786373137863732Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS697416_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 4E-7 6.398 rs2836026 0.18383269 lysophosphatidylethanolamine 22:6 measurement (EFO:0010371)
 PMID:23823483
GWAS697565_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 9E-7 6.046 rs2836026 0.17783532 lysophosphatidylcholine 18:0 measurement (EFO:0010359)
 PMID:23823483
GWAS699857_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000005 5.302 rs2836026 0.16705029 lysophosphatidylcholine 20:4 measurement (EFO:0010363)
 PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference