GWAS696152_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS696152_H (cortical thickness QTL GWAS696152 (human)) Homo sapiens

Symbol: GWAS696152_H
Name: cortical thickness QTL GWAS696152 (human)
RGD ID: 407047176
Trait: cortical thickness
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38139,445,012 - 39,445,013RGD_MAPPER_PIPELINEGRCh38
GRCh37139,910,684 - 39,910,685RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS696152_HHumancortical thickness  IAGPrs617577405850206 GWAS_CATALOGPMID:36893272
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352225MACF1microtubule actin crosslinking factor 113908416739487138Human

Position Markers

Peak: (rs617577)
Human AssemblyChrPosition (strand)Source
GRCh38139,445,012 - 39,445,013RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407047176GWAS696152_Hcortical thickness QTL GWAS696152 (human)6e-09cortical thickness13944501239445013Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS696152_H GCST90271804 Medial prefrontal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 6E-9 8.222 rs617577 0.0766 cortical thickness (EFO:0004840)
 PMID:36893272
None Available GCST90399881 Regional cortical thickness (fusiform) 34,554 European ancestry individuals T NR 4E-9 8.398 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399882 Regional cortical thickness (inferiorparietal) 34,532 European ancestry individuals T NR 9E-9 8.046 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399904 Regional cortical thickness (superiorfrontal) 34,544 European ancestry individuals T NR 5E-9 8.302 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399875 Global cortical thickness (GlobalMeanMean) 34,552 European ancestry individuals T NR 1E-10 10 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399900 Regional cortical thickness (precentral) 34,559 European ancestry individuals T NR 2E-8 7.699 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399886 Regional cortical thickness (lateralorbitofrontal) 34,562 European ancestry individuals T NR 3E-8 7.523 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399887 Regional cortical thickness (lingual) 34,578 European ancestry individuals T NR 4E-8 7.398 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90399901 Regional cortical thickness (precuneus) 34,559 European ancestry individuals T NR 3E-8 7.523 rs617577 N/A cortical thickness (EFO:0004840)
 PMID:38890310
Database Acc Id Source(s)
GWAS Catalog GCST90271804 GWAS Catalog

RGD Curation Notes
Note Type Note Reference