GWAS691305_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS691305_H (Testicular Germ Cell Tumor QTL GWAS691305 (human)) Homo sapiens

Symbol: GWAS691305_H
Name: Testicular Germ Cell Tumor QTL GWAS691305 (human)
RGD ID: 407042329
Trait: Testicular Germ Cell Tumor
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38316,583,541 - 16,583,542RGD_MAPPER_PIPELINEGRCh38
GRCh37316,625,048 - 16,625,049RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS691305_HHumanTesticular Germ Cell Tumor  IAGPrs10510452405850206 GWAS_CATALOGPMID:25877299
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs10510452)
Human AssemblyChrPosition (strand)Source
GRCh38316,583,541 - 16,583,542RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406885520GWAS534496_HTesticular Germ Cell Tumor QTL GWAS534496 (human)1e-09Testicular Germ Cell Tumor31658354116583542Human
407028417GWAS677393_Htesticular carcinoma QTL GWAS677393 (human)1e-08testicular carcinoma31658354116583542Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407042329GWAS691305_HTesticular Germ Cell Tumor QTL GWAS691305 (human)3e-09Testicular Germ Cell Tumor31658354116583542Human
406885567GWAS534543_HTesticular Germ Cell Tumor QTL GWAS534543 (human)3e-10Testicular Germ Cell Tumor31658354116583542Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS534496_H GCST004635 Testicular germ cell tumor 5,518 European ancestry cases, 19,055 European ancestry controls A 0.7 1E-9 9 rs10510452 1.18 Testicular Germ Cell Tumor (EFO:1000566)
 PMID:28604728
GWAS534543_H GCST004713 Testicular germ cell tumor 3,558 European ancestry cases, 13,970 European ancestry controls G 0.3 3E-10 9.523 rs10510452 1.2195122 Testicular Germ Cell Tumor (EFO:1000566)
 PMID:28604732
GWAS677393_H GCST002022 Testicular germ cell tumor 986 European ancestry cases, 4,946 European ancestry controls A 0.69 1E-8 8 rs10510452 1.24 testicular carcinoma (EFO:0005088)
 PMID:23666240
GWAS691305_H GCST002855 Testicular germ cell tumor 1,326 European ancestry cases, 6,687 European ancestry controls A 0.729 3E-9 8.523 rs10510452 1.32 Testicular Germ Cell Tumor (EFO:1000566)
 PMID:25877299
Database Acc Id Source(s)
GWAS Catalog GCST002855 GWAS Catalog

RGD Curation Notes
Note Type Note Reference