GWAS690555_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS690555_H (docosahexaenoic acid measurement QTL GWAS690555 (human)) Homo sapiens

Symbol: GWAS690555_H
Name: docosahexaenoic acid measurement QTL GWAS690555 (human)
RGD ID: 407041579
Trait: fatty acid amount   (VT:0010046)    
Measurement Type: blood free fatty acids level   (CMO:0000117)    
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381224,360,767 - 24,360,768RGD_MAPPER_PIPELINEGRCh38
GRCh371224,513,701 - 24,513,702RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS690555_HHumanblood free fatty acids level  IAGPrs11047395405850206Based on the EFO term IDGWAS_CATALOGPMID:26584805

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS690555_HHumanfatty acid amount  IAGPrs11047395405850206Based on the EFO term IDGWAS_CATALOGPMID:26584805

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS690555_HHumandocosahexaenoic acid measurement  IAGPrs11047395405850206 GWAS_CATALOGPMID:26584805
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603322SOX5SRY-box transcription factor 5122352950424562650Human

Position Markers

Peak: (rs11047395)
Human AssemblyChrPosition (strand)Source
GRCh381224,360,767 - 24,360,768RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407041579GWAS690555_Hdocosahexaenoic acid measurement QTL GWAS690555 (human)0.000002fatty acid amount (VT:0010046)blood free fatty acids level (CMO:0000117)122436076724360768Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS690555_H GCST003240 Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid) 717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls G 0.0354 0.000002 5.699 rs11047395 0.2639 docosahexaenoic acid measurement (EFO:0007761)
 PMID:26584805
Database Acc Id Source(s)
GWAS Catalog GCST003240 GWAS Catalog

RGD Curation Notes
Note Type Note Reference