GWAS687483_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS687483_H (myeloid white cell count QTL GWAS687483 (human)) Homo sapiens

Symbol: GWAS687483_H
Name: myeloid white cell count QTL GWAS687483 (human)
RGD ID: 407038507
Trait: myeloid white cell count
Measurement Type: white blood cell count   (CMO:0000027)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38318,722,783 - 18,722,784RGD_MAPPER_PIPELINEGRCh38
GRCh37318,764,275 - 18,764,276RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS687483_HHumanwhite blood cell count  IAGPrs4487258405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS687483_HHumanmyeloid white cell count  IAGPrs4487258405850206 GWAS_CATALOGPMID:32888493
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4487258)
Human AssemblyChrPosition (strand)Source
GRCh38318,722,783 - 18,722,784RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407038507GWAS687483_Hmyeloid white cell count QTL GWAS687483 (human)2e-13myeloid white cell countwhite blood cell count (CMO:0000027)31872278318722784Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS687483_H GCST90002378 White blood cell count 746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.174075 2E-13 12.699 rs4487258 N/A myeloid white cell count (EFO:0007988)
 PMID:32888493
Database Acc Id Source(s)
GWAS Catalog GCST90002378 GWAS Catalog

RGD Curation Notes
Note Type Note Reference