GWAS683633_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS683633_H (myeloid white cell count QTL GWAS683633 (human)) Homo sapiens

Symbol: GWAS683633_H
Name: myeloid white cell count QTL GWAS683633 (human)
RGD ID: 407034657
Trait: myeloid white cell count
Measurement Type: white blood cell count   (CMO:0000027)    
LOD Score: Not Available
P Value: 7.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383132,532,097 - 132,532,098RGD_MAPPER_PIPELINEGRCh38
GRCh373132,250,941 - 132,250,942RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS683633_HHumanwhite blood cell count  IAGPrs11915472405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS683633_HHumanmyeloid white cell count  IAGPrs11915472405850206 GWAS_CATALOGPMID:32888493
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1317589DNAJC13DnaJ heat shock protein family (Hsp40) member C133132417502132539032Human

Position Markers

Peak: (rs11915472)
Human AssemblyChrPosition (strand)Source
GRCh383132,532,097 - 132,532,098RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407034657GWAS683633_Hmyeloid white cell count QTL GWAS683633 (human)7e-16myeloid white cell countwhite blood cell count (CMO:0000027)3132532097132532098Human
407257823GWAS906799_Haspartate aminotransferase measurement QTL GWAS906799 (human)2e-16aspartate aminotransferase measurementblood aspartate aminotransferase activity level (CMO:0000580)3132532097132532098Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS683633_H GCST90002374 White blood cell count 562,243 European ancestry individuals G 0.090317 7E-16 15.155 rs11915472 0.025857 myeloid white cell count (EFO:0007988)
 PMID:32888493
GWAS906799_H GCST90018944 Aspartate aminotransferase levels 342,990 European ancestry individuals, 150,068 East Asian ancestry individuals G NR 2E-16 15.699 rs11915472 0.0328 aspartate aminotransferase measurement (EFO:0004736)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90002374 GWAS Catalog

RGD Curation Notes
Note Type Note Reference