GWAS682317_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS682317_H (oropharynx cancer QTL GWAS682317 (human)) Homo sapiens

Symbol: GWAS682317_H
Name: oropharynx cancer QTL GWAS682317 (human)
RGD ID: 407033341
Trait: oropharynx cancer
LOD Score: Not Available
P Value: 9.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38499,318,162 - 99,318,163RGD_MAPPER_PIPELINEGRCh38
GRCh374100,239,319 - 100,239,320RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS682317_HHumanoropharynx cancer  IAGPrs1229984405850206 GWAS_CATALOGPMID:27749845
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348288ADH1Balcohol dehydrogenase 1B (class I), beta polypeptide49930497199321401Human
153350911LOC126807122P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:100238861-10024006049931770499318903Human

Position Markers

Peak: (rs1229984)
Human AssemblyChrPosition (strand)Source
GRCh38499,318,162 - 99,318,163RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407380298GWAS1029274_HX-24422 measurement QTL GWAS1029274 (human)6e-31X-24422 measurement49931816299318163Human
407348549GWAS997525_Hurate measurement QTL GWAS997525 (human)5e-19urate measurementblood uric acid level (CMO:0000501)49931816299318163Human
407381325GWAS1030301_Hrisk-taking behaviour QTL GWAS1030301 (human)5e-12risk-taking behaviour49931816299318163Human
407260225GWAS909201_Hphospholipids:total lipids ratio QTL GWAS909201 (human)1e-11hexadecanedioate measurement49931816299318163Human
407377472GWAS1026448_Hapolipoprotein B measurement QTL GWAS1026448 (human)3e-13apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)49931816299318163Human
407305295GWAS954271_Halcohol use disorder measurement, longitudinal alcohol consumption measurement QTL GWAS954271 (human)5e-102alcohol use disorder measurement, longitudinal alcohol consumption measurementcalculated drink intake measurement (CMO:0002330)49931816299318163Human
407096393GWAS745369_Hmean corpuscular hemoglobin QTL GWAS745369 (human)2e-18mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)49931816299318163Human
407086927GWAS735903_Hlow density lipoprotein cholesterol measurement QTL GWAS735903 (human)1e-20upper aerodigestive tract neoplasmblood low density lipoprotein cholesterol level (CMO:0000053)49931816299318163Human
407399257GWAS1048233_Htaste liking measurement QTL GWAS1048233 (human)3e-27taste liking measurement49931816299318163Human
407355219GWAS1004195_Htotal cholesterol measurement QTL GWAS1004195 (human)1e-16total cholesterol measurementblood total cholesterol level (CMO:0000051)49931816299318163Human
407381086GWAS1030062_Hprotein intake measurement QTL GWAS1030062 (human)3e-14eating behavior trait (VT:0001431)blood non-high density lipoprotein cholesterol level (CMO:0003967)49931816299318163Human
407012184GWAS661160_Halcohol dependence QTL GWAS661160 (human)1e-31alcohol dependence49931816299318163Human
407268188GWAS917164_Halcohol consumption measurement QTL GWAS917164 (human)2e-308alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407381076GWAS1030052_Hfat intake measurement QTL GWAS1030052 (human)1e-22eating behavior trait (VT:0001431)49931816299318163Human
407363438GWAS1012414_Hbody mass index QTL GWAS1012414 (human)2e-11systolic blood pressuresystolic blood pressure (CMO:0000004)49931816299318163Human
407086194GWAS735170_Hheel bone mineral density QTL GWAS735170 (human)6e-09body mass indexbody mass index (BMI) (CMO:0000105)49931816299318163Human
407375225GWAS1024201_Hgout QTL GWAS1024201 (human)1e-15gout49931816299318163Human
407381113GWAS1030089_Halcohol consumption measurement QTL GWAS1030089 (human)4e-248alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407004278GWAS653254_Hreticulocyte count QTL GWAS653254 (human)6e-12serum albumin measurementserum albumin level (CMO:0000550)49931816299318163Human
407370355GWAS1019331_Halcohol drinking QTL GWAS1019331 (human)2e-24alcohol drinking49931816299318163Human
407370353GWAS1019329_Halcohol consumption measurement QTL GWAS1019329 (human)6e-39alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407331711GWAS980687_Halcohol dependence measurement QTL GWAS980687 (human)1e-17blood protein measurementblood protein measurement (CMO:0000028)49931816299318163Human
407375216GWAS1024192_Hgout QTL GWAS1024192 (human)5e-23gout49931816299318163Human
407393394GWAS1042370_Hoctadecanedioate measurement QTL GWAS1042370 (human)3e-12octadecanedioate measurement49931816299318163Human
407094392GWAS743368_Halcohol consumption measurement QTL GWAS743368 (human)4e-19alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407386741GWAS1035717_HX-12127 measurement QTL GWAS1035717 (human)1e-13X-12127 measurement49931816299318163Human
407329912GWAS978888_Halcohol consumption measurement QTL GWAS978888 (human)4e-56alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407354119GWAS1003095_Hlow density lipoprotein cholesterol measurement, phospholipids:total lipids ratio QTL GWAS1003095 (human)8e-13fatty acid measurementblood low density lipoprotein cholesterol level (CMO:0000053)49931816299318163Human
407011331GWAS660307_Halcohol dependence measurement QTL GWAS660307 (human)2e-23serum urea measurementserum urea level (CMO:0003877)49931816299318163Human
407358982GWAS1007958_Hsystolic blood pressure QTL GWAS1007958 (human)9e-15systolic blood pressuresystolic blood pressure (CMO:0000004)49931816299318163Human
407033345GWAS682321_Horal cavity cancer QTL GWAS682321 (human)1e-09serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)49931816299318163Human
407011334GWAS660310_Halcohol dependence measurement QTL GWAS660310 (human)2e-22alcohol dependence measurement49931816299318163Human
407371010GWAS1019986_Halcohol consumption measurement QTL GWAS1019986 (human)6e-91alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407330304GWAS979280_Halcohol dependence QTL GWAS979280 (human)5e-09taste liking measurement49931816299318163Human
407371008GWAS1019984_Hcarrier status, alcohol drinking QTL GWAS1019984 (human)7e-100carrier status, alcohol drinking49931816299318163Human
407069451GWAS718427_Hblood urea nitrogen measurement QTL GWAS718427 (human)1e-08testosterone measurementserum testosterone level (CMO:0000568)49931816299318163Human
407357453GWAS1006429_Halcohol use disorder measurement QTL GWAS1006429 (human)4e-68alcohol use disorder measurement49931816299318163Human
407171848GWAS820824_Hbitter alcoholic beverage consumption measurement QTL GWAS820824 (human)2e-140bitter alcoholic beverage consumption measurementdrink intake measurement (CMO:0000771)49931816299318163Human
407394309GWAS1043285_Halcohol consumption measurement QTL GWAS1043285 (human)7e-229alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407394310GWAS1043286_Halcohol consumption measurement QTL GWAS1043286 (human)7e-173alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407089936GWAS738912_Hapolipoprotein B measurement QTL GWAS738912 (human)8e-10apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)49931816299318163Human
407354899GWAS1003875_Hbody weight QTL GWAS1003875 (human)5e-10body mass (VT:0001259)body weight (CMO:0000012)49931816299318163Human
407379229GWAS1028205_Halcohol consumption measurement QTL GWAS1028205 (human)2e-157alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407316511GWAS965487_Halcohol use disorder measurement QTL GWAS965487 (human)3e-107alcohol use disorder measurement49931816299318163Human
407047706GWAS696682_Halcohol consumption measurement QTL GWAS696682 (human)1e-49alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407379218GWAS1028194_Halcohol consumption measurement QTL GWAS1028194 (human)5e-63alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407076376GWAS725352_Hvisceral adipose tissue measurement QTL GWAS725352 (human)3e-09low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)49931816299318163Human
407360538GWAS1009514_Hsystolic blood pressure QTL GWAS1009514 (human)6e-16systolic blood pressuresystolic blood pressure (CMO:0000004)49931816299318163Human
407047709GWAS696685_Halcohol consumption measurement QTL GWAS696685 (human)5e-47alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407336740GWAS985716_Hbody height QTL GWAS985716 (human)3e-08body height (VT:0001253)blood C-reactive protein level (CMO:0003160)49931816299318163Human
407307043GWAS956019_Halcohol use disorder measurement, longitudinal alcohol consumption measurement QTL GWAS956019 (human)4e-133alcohol use disorder measurement, longitudinal alcohol consumption measurementcalculated drink intake measurement (CMO:0002330)49931816299318163Human
407316513GWAS965489_Halcohol use disorder measurement, alcohol consumption measurement QTL GWAS965489 (human)6e-267alcohol use disorder measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407011886GWAS660862_Hbody mass index QTL GWAS660862 (human)0.0000001body mass indexbody mass index (BMI) (CMO:0000105)49931816299318163Human
407377188GWAS1026164_Halkaline phosphatase measurement QTL GWAS1026164 (human)1e-24alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)49931816299318163Human
407092780GWAS741756_Hvitamin D measurement QTL GWAS741756 (human)5e-13vitamin D measurement49931816299318163Human
407350834GWAS999810_Hfatty acid measurement QTL GWAS999810 (human)4e-32fatty acid measurement49931816299318163Human
407221311GWAS870287_Hnon-alcoholic fatty liver disease QTL GWAS870287 (human)6e-11non-alcoholic fatty liver disease49931816299318163Human
407007171GWAS656147_Hreticulocyte measurement QTL GWAS656147 (human)2e-10reticulocyte morphology trait (VT:0002424)blood sodium level (CMO:0000499)49931816299318163Human
407166407GWAS815383_Hreticulocyte count QTL GWAS815383 (human)4e-09vitamin D measurementtotal reticulocyte count (CMO:0003020)49931816299318163Human
407391691GWAS1040667_Hbody mass index QTL GWAS1040667 (human)5e-17body mass indexbody mass index (BMI) (CMO:0000105)49931816299318163Human
407390158GWAS1039134_Hesophageal carcinoma QTL GWAS1039134 (human)3e-45esophageal carcinoma49931816299318163Human
407073476GWAS722452_Halcohol consumption measurement QTL GWAS722452 (human)2e-173alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407210188GWAS859164_Halcohol consumption measurement QTL GWAS859164 (human)5e-324alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407162318GWAS811294_Hesophageal carcinoma QTL GWAS811294 (human)8e-24esophageal carcinoma49931816299318163Human
407146696GWAS795672_Hesophageal carcinoma QTL GWAS795672 (human)3e-44esophageal carcinoma49931816299318163Human
407098574GWAS747550_Halcohol drinking QTL GWAS747550 (human)2e-72alcohol drinking49931816299318163Human
407173835GWAS822811_Hreticulocyte measurement QTL GWAS822811 (human)1e-10reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)49931816299318163Human
407119829GWAS768805_Halcohol drinking QTL GWAS768805 (human)2e-08complex trait49931816299318163Human
407098576GWAS747552_Halcohol consumption measurement QTL GWAS747552 (human)2e-66alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407398367GWAS1047343_Htaste liking measurement QTL GWAS1047343 (human)2e-42taste liking measurement49931816299318163Human
407365597GWAS1014573_Halcohol use disorder measurement, longitudinal alcohol consumption measurement QTL GWAS1014573 (human)2e-65alcohol use disorder measurement, longitudinal alcohol consumption measurementcalculated drink intake measurement (CMO:0002330)49931816299318163Human
407119067GWAS768043_Hcardiovascular disease QTL GWAS768043 (human)8e-15cardiovascular disease49931816299318163Human
407395543GWAS1044519_Htaste liking measurement QTL GWAS1044519 (human)6e-14taste liking measurement49931816299318163Human
406921190GWAS570166_Hpulse pressure measurement QTL GWAS570166 (human)0.0000005pulse pressure measurementpulse pressure (CMO:0000292)49931816299318163Human
407380719GWAS1029695_Halcohol consumption measurement QTL GWAS1029695 (human)3e-176alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407067624GWAS716600_Hbody mass index QTL GWAS716600 (human)1e-12pharynx cancerbody mass index (BMI) (CMO:0000105)49931816299318163Human
406925553GWAS574529_Halcohol consumption measurement, alcohol drinking QTL GWAS574529 (human)3e-32IGF-1 measurementblood insulin-like growth factor 1 level (CMO:0001297)49931816299318163Human
407370999GWAS1019975_Halcohol consumption measurement QTL GWAS1019975 (human)3e-101alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407370998GWAS1019974_Halcohol drinking QTL GWAS1019974 (human)2e-73alcohol drinking49931816299318163Human
406925554GWAS574530_Halcohol consumption measurement, alcohol drinking QTL GWAS574530 (human)0.000003alcohol consumption measurement, alcohol drinkingethanol drink intake rate (CMO:0001407)49931816299318163Human
407354354GWAS1003330_Halcohol use disorder measurement QTL GWAS1003330 (human)3e-17alcohol use disorder measurement49931816299318163Human
407371007GWAS1019983_Halcohol consumption measurement, carrier status QTL GWAS1019983 (human)3e-95alcohol consumption measurement, carrier statusethanol drink intake rate (CMO:0001407)49931816299318163Human
407380721GWAS1029697_Halcohol consumption measurement QTL GWAS1029697 (human)2e-182alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407033336GWAS682312_Hhead and neck malignant neoplasia QTL GWAS682312 (human)2e-15head and neck malignant neoplasia49931816299318163Human
407355900GWAS1004876_Hpulse pressure measurement QTL GWAS1004876 (human)3e-24pulse pressure measurementpulse pressure (CMO:0000292)49931816299318163Human
407380723GWAS1029699_Halcohol consumption measurement QTL GWAS1029699 (human)2e-101alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407162105GWAS811081_Halcohol dependence QTL GWAS811081 (human)3e-21alcohol dependence49931816299318163Human
407329785GWAS978761_Halcohol dependence measurement QTL GWAS978761 (human)4e-10alcohol dependence measurement49931816299318163Human
407319801GWAS968777_Halcohol consumption measurement QTL GWAS968777 (human)7e-280alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407371001GWAS1019977_Halcohol drinking QTL GWAS1019977 (human)4e-86alcohol drinking49931816299318163Human
407033341GWAS682317_Horopharynx cancer QTL GWAS682317 (human)9e-09oropharynx cancer49931816299318163Human
406925696GWAS574672_Halcohol consumption measurement, alcohol drinking QTL GWAS574672 (human)0.0000004alcohol consumption measurement, alcohol drinkingethanol drink intake rate (CMO:0001407)49931816299318163Human
407073666GWAS722642_Hprotein intake measurement QTL GWAS722642 (human)0.0000009eating behavior trait (VT:0001431)49931816299318163Human
407329926GWAS978902_Halcohol dependence measurement QTL GWAS978902 (human)1e-45alcohol dependence measurement49931816299318163Human
407305351GWAS954327_Halcohol use disorder measurement, alcohol dependence QTL GWAS954327 (human)5e-74alcohol use disorder measurement, alcohol dependence49931816299318163Human
406925699GWAS574675_Halcohol consumption measurement, alcohol drinking QTL GWAS574675 (human)2e-20saturated fatty acids to total fatty acids percentage ethanol drink intake rate (CMO:0001407)49931816299318163Human
407249024GWAS898000_Hbody fat percentage QTL GWAS898000 (human)2e-09clinical and behavioural ideal cardiovascular healthglomerular filtration rate (CMO:0000490)49931816299318163Human
407393679GWAS1042655_Halcohol consumption measurement QTL GWAS1042655 (human)3e-50alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407073931GWAS722907_Hlow density lipoprotein cholesterol measurement QTL GWAS722907 (human)7e-17low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)49931816299318163Human
407415680GWAS1064656_Hpulse pressure measurement QTL GWAS1064656 (human)4e-17pulse pressure measurementpulse pressure (CMO:0000292)49931816299318163Human
407305870GWAS954846_Halcohol use disorder measurement, longitudinal alcohol consumption measurement QTL GWAS954846 (human)4e-16alcohol use disorder measurement, longitudinal alcohol consumption measurementcalculated drink intake measurement (CMO:0002330)49931816299318163Human
406965897GWAS614873_Hsocial interaction measurement QTL GWAS614873 (human)4e-25social interaction measurementvoluntary social interaction measurement (CMO:0002676)49931816299318163Human
407305356GWAS954332_Halcohol use disorder measurement, alcohol dependence QTL GWAS954332 (human)6e-17alcohol use disorder measurement, alcohol dependence49931816299318163Human
407073672GWAS722648_Hfat intake measurement QTL GWAS722648 (human)1e-28eating behavior trait (VT:0001431)49931816299318163Human
407305357GWAS954333_Halcohol use disorder measurement, alcohol dependence QTL GWAS954333 (human)5e-85alcohol use disorder measurement, alcohol dependence49931816299318163Human
407367561GWAS1016537_Hserum gamma-glutamyl transferase measurement QTL GWAS1016537 (human)2e-14serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)49931816299318163Human
407085713GWAS734689_Halcohol consumption measurement QTL GWAS734689 (human)8e-202alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407393692GWAS1042668_Halcohol use disorder measurement QTL GWAS1042668 (human)1e-131alcohol use disorder measurement49931816299318163Human
407358354GWAS1007330_Hpulse pressure measurement QTL GWAS1007330 (human)3e-25pulse pressure measurementpulse pressure (CMO:0000292)49931816299318163Human
407393681GWAS1042657_Halcohol use disorder measurement QTL GWAS1042657 (human)7e-162alcohol use disorder measurement49931816299318163Human
407076511GWAS725487_Hrisk-taking behaviour QTL GWAS725487 (human)4e-22risk-taking behaviour49931816299318163Human
406982558GWAS631534_Hsystolic blood pressure QTL GWAS631534 (human)6e-13systolic blood pressuresystolic blood pressure (CMO:0000004)49931816299318163Human
407394221GWAS1043197_Hserum alanine aminotransferase measurement QTL GWAS1043197 (human)1e-14serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)49931816299318163Human
407354284GWAS1003260_Hesophageal carcinoma QTL GWAS1003260 (human)2e-46esophageal carcinoma49931816299318163Human
407214510GWAS863486_Hbody mass index QTL GWAS863486 (human)3e-16serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)49931816299318163Human
407393700GWAS1042676_Halcohol use disorder measurement QTL GWAS1042676 (human)5e-37alcohol use disorder measurement49931816299318163Human
407098796GWAS747772_Herythrocyte count QTL GWAS747772 (human)7e-12urate measurementblood uric acid level (CMO:0000501)49931816299318163Human
407354294GWAS1003270_Hlow density lipoprotein cholesterol measurement QTL GWAS1003270 (human)3e-23low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)49931816299318163Human
407303347GWAS952323_Halcohol use disorder measurement, longitudinal alcohol consumption measurement QTL GWAS952323 (human)1e-19alcohol use disorder measurement, longitudinal alcohol consumption measurementcalculated drink intake measurement (CMO:0002330)49931816299318163Human
406938807GWAS587783_Hheel bone mineral density QTL GWAS587783 (human)4e-08human papilloma virus infection, oral cavity cancerbone mineral density (CMO:0001226)49931816299318163Human
407387312GWAS1036288_Halcohol consumption measurement QTL GWAS1036288 (human)6e-284alcohol consumption measurementethanol drink intake rate (CMO:0001407)49931816299318163Human
407380916GWAS1029892_Hliver fat measurement QTL GWAS1029892 (human)9e-14liver lipid amount (VT:0010764)liver fat morphological measurement (CMO:0002187)49931816299318163Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS570166_H GCST004278 Pulse pressure 140,886 European ancestry individuals C 0.9744467 5E-7 6.302 rs1229984 0.465 pulse pressure measurement (EFO:0005763)
 PMID:28135244
GWAS574529_H GCST004405 Alcohol consumption (drinks per week) 23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.        T 0.05 3E-32 31.523 rs1229984 0.19 alcohol consumption measurement (EFO:0007878)
alcohol drinking (EFO:0004329)
 PMID:28485404
GWAS574530_H GCST004405 Alcohol consumption (drinks per week) 23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.        T 0.05 0.000003 5.523 rs1229984 0.21 alcohol consumption measurement (EFO:0007878)
alcohol drinking (EFO:0004329)
 PMID:28485404
GWAS574672_H GCST004404 Alcohol consumption (drinkers vs non-drinkers) 23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.        ? 0.93 4E-7 6.398 rs1229984 1.39 alcohol consumption measurement (EFO:0007878)
alcohol drinking (EFO:0004329)
 PMID:28485404
GWAS574675_H GCST004404 Alcohol consumption (drinkers vs non-drinkers) 23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.        ? 0.95 2E-20 19.699 rs1229984 1.27 alcohol consumption measurement (EFO:0007878)
alcohol drinking (EFO:0004329)
 PMID:28485404
GWAS587783_H GCST007066 Heel bone mineral density approximately 446,000 European ancestry individuals ? NR 4E-8 7.398 rs1229984 N/A heel bone mineral density (EFO:0009270)
 PMID:30595370
GWAS614873_H GCST006921 Regular attendance at a pub or social club 124,047 European ancestry cases, 328,255 European ancestry controls T 0.0236479 4E-25 24.398 rs1229984 0.0312757 social interaction measurement (EFO:0009592)
 PMID:29970889
GWAS631534_H GCST007087 Systolic blood pressure approximately 422,000 European ancestry individuals ? NR 6E-13 12.222 rs1229984 N/A systolic blood pressure (EFO:0006335)
 PMID:30595370
GWAS653254_H GCST90002385 High light scatter reticulocyte count 408,112 British individuals C 0.9747907 6E-12 11.222 rs1229984 0.048780907 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS656147_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals C 0.9747934 2E-10 9.699 rs1229984 0.04492588 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS660307_H GCST004711 Alcohol dependence 4,629 African American individuals, 5,131 European ancestry individuals T 0.071 2E-23 22.699 rs1229984 0.0164 alcohol dependence measurement (EFO:0007835)
 PMID:24166409
GWAS660310_H GCST004711 Alcohol dependence 4,629 African American individuals, 5,131 European ancestry individuals ? NR 2E-22 21.699 rs1229984 N/A alcohol dependence measurement (EFO:0007835)
 PMID:24166409
GWAS660862_H GCST004904 Body mass index up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men C 0.27 1E-7 7 rs1229984 0.034 body mass index (EFO:0004340)
 PMID:28892062
GWAS661160_H GCST004712 Alcohol dependence 2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls C 0.971 1E-31 31 rs1229984 6.5789475 PMID:24166409
GWAS682312_H GCST003857 Oral cavity and pharyngeal cancer 2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls G 0.94 2E-15 14.699 rs1229984 1.7898692 head and neck malignant neoplasia (EFO:0006859)
 PMID:27749845
GWAS682317_H GCST003859 Oropharynx cancer 2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls G 0.9401455463215125 9E-9 8.046 rs1229984 1.832173 oropharynx cancer (EFO:1001931)
 PMID:27749845
GWAS682321_H GCST003858 Oral cavity cancer 2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls G 0.94 1E-9 9 rs1229984 1.7436792 oral cavity cancer (EFO:0005570)
 PMID:27749845
GWAS696682_H GCST008675 Maximum habitual alcohol consumption 126,936 European ancestry individuals, 17,029 African American individuals ? NR 1E-49 49 rs1229984 14.821 alcohol consumption measurement (EFO:0007878)
 PMID:31151762
GWAS696685_H GCST008675 Maximum habitual alcohol consumption 126,936 European ancestry individuals, 17,029 African American individuals C NR 5E-47 46.302 rs1229984 0.3553 alcohol consumption measurement (EFO:0007878)
 PMID:31151762
None Available GCST90309341 Smoking and associated risk behaviours (confirmatory factor analysis Factor 6) 310,267 European ancestry individuals ? NR 2E-21 20.699 rs1229984 N/A smoking behaviour measurement (EFO:0005671)
risk-taking behaviour (EFO:0008579)
 PMID:38965376
GWAS716600_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 1E-12 12 rs1229984 N/A body mass index (EFO:0004340)
 PMID:30595370
GWAS718427_H GCST008062 Blood urea nitrogen levels 416,178 European and unknown ancestry individuals T 0.571 1E-8 8 rs1229984 0.0079 blood urea nitrogen measurement (EFO:0004741)
 PMID:31152163
GWAS722452_H GCST008811 Alcohol consumption (drinks per week) up to 357,854 European ancestry individuals C 0.98 2E-173 172.699 rs1229984 0.246 alcohol consumption measurement (EFO:0007878)
 PMID:30679032
GWAS722642_H GCST010498 Relative protein intake 175,253 European ancestry individuals ? NR 9E-7 6.046 rs1229984 0.044 protein intake measurement (EFO:0010810)
 PMID:32393786
GWAS722648_H GCST010499 Relative fat intake 175,253 European ancestry individuals ? NR 1E-28 28 rs1229984 0.098 fat intake measurement (EFO:0010809)
 PMID:32393786
GWAS722907_H GCST010245 LDL cholesterol levels 440,546 European ancestry individuals T 0.0272003 7E-17 16.155 rs1229984 0.0528485 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32203549
GWAS725352_H GCST008744 Predicted visceral adipose tissue 325,153 British ancestry individuals T 0.02239 3E-9 8.523 rs1229984 0.049819224 visceral adipose tissue measurement (EFO:0004765)
 PMID:31501611
GWAS725487_H GCST007323 Risk-taking tendency (4-domain principal component model) 315,894 European ancestry individuals T 0.023 4E-22 21.398 rs1229984 0.083182804 risk-taking behaviour (EFO:0008579)
 PMID:30643258
None Available GCST008647 Urinary sodium excretion 446,237 European ancestry individuals T 0.0265565 2E-10 9.699 rs1229984 0.0241902 sodium measurement (EFO:0009282)
 PMID:31409800
GWAS734689_H GCST007328 Alcohol consumption (drinks per week) 414,343 European ancestry individuals T 0.0228 8E-202 201.097 rs1229984 0.2266165 alcohol consumption measurement (EFO:0007878)
 PMID:30643258
GWAS735170_H GCST006979 Heel bone mineral density 426,824 British ancestry individuals T 0.02372 6E-9 8.222 rs1229984 0.0360185 heel bone mineral density (EFO:0009270)
 PMID:30598549
GWAS735903_H GCST010204 Low density lipoprotein cholesterol levels 324,708 British ancestry individuals ? NR 1E-20 20 rs1229984 0.0804 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32154731
GWAS738912_H GCST010243 Apolipoprotein B levels 439,214 European ancestry individuals T 0.0271895 8E-10 9.097 rs1229984 0.0388703 apolipoprotein B measurement (EFO:0004615)
 PMID:32203549
GWAS741756_H GCST010144 Serum 25-Hydroxyvitamin D levels 443,734 European ancestry individuals C 0.973099 5E-13 12.302 rs1229984 0.046854 vitamin D measurement (EFO:0004631)
 PMID:32059762
GWAS743368_H GCST009800 Alcohol consumption (drinks per week) 58,610 Japanese ancestry individuals ? NR 4E-19 18.398 rs1229984 0.07 alcohol consumption measurement (EFO:0007878)
 PMID:31959922
GWAS745369_H GCST007068 Mean corpuscular hemoglobin approximately 443,000 European ancestry individuals ? NR 2E-18 17.699 rs1229984 N/A mean corpuscular hemoglobin (EFO:0004527)
 PMID:30595370
GWAS747550_H GCST009799 Alcohol consumption (drinkers vs non-drinkers) 83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers ? NR 2E-72 71.699 rs1229984 0.038 alcohol drinking (EFO:0004329)
 PMID:31959922
GWAS747552_H GCST009797 Alcohol consumption (heavy vs. light/non-drinkers) 21,967 British ancestry cases, 103,282 British ancestry controls C 0.98 2E-66 65.699 rs1229984 17.209 alcohol consumption measurement (EFO:0007878)
 PMID:31998841
GWAS747772_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 7E-12 11.155 rs1229984 N/A erythrocyte count (EFO:0004305)
 PMID:30595370
GWAS768043_H GCST007072 Cardiovascular disease approximately 459,000 European ancestry individuals ? NR 8E-15 14.097 rs1229984 N/A cardiovascular disease (EFO:0000319)
 PMID:30595370
GWAS768805_H GCST002065 Alcohol consumption 2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals ? 0.03 2E-8 7.699 rs1229984 N/A alcohol drinking (EFO:0004329)
 PMID:23743675
None Available GCST001011 Oral cavity and pharyngeal cancer 2,091 European ancestry cases, 8,334 European ancestry controls T 0.94 1E-20 20 rs1229984 1.56 upper aerodigestive tract neoplasm (EFO:0004284)
 PMID:21437268
GWAS795672_H GCST90013699 Esophageal cancer 1,300 Japanese ancestry cases, 195,745 Japanese ancestry controls C 0.261191323 3E-44 43.523 rs1229984 2.0655997 esophageal carcinoma (EFO:0002916)
 PMID:32514122
None Available GCST90309356 Alcohol use and misuse (confirmatory factor analysis Factor 22) 118,022 European ancestry individuals ? NR 4E-61 60.398 rs1229984 N/A alcohol use disorder measurement (EFO:0009458)
alcohol consumption measurement (EFO:0007878)
 PMID:38965376
GWAS811081_H GCST001883 Alcohol dependence 117 Korean ancestry cases, 279 Korean ancestry controls ? NR 3E-21 20.523 rs1229984 2.35 PMID:23456092
GWAS811294_H GCST000466 Esophageal cancer 182 Japanese ancestry cases, 927 Japanese ancestry controls G NR 8E-24 23.097 rs1229984 1.79 esophageal carcinoma (EFO:0002916)
 PMID:19698717
GWAS815383_H GCST90002405 Reticulocyte count 408,112 British individuals C 0.9748243 4E-9 8.398 rs1229984 0.042106487 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS820824_H GCST008522 Bitter alcoholic beverage consumption 336,448 European ancestry individuals C 0.9725 2E-140 139.699 rs1229984 0.0821 bitter alcoholic beverage consumption measurement (EFO:0010092)
 PMID:31046077
GWAS822811_H GCST90002387 Immature fraction of reticulocytes 408,112 British individuals C 0.9748287 1E-10 10 rs1229984 0.046019696 reticulocyte measurement (EFO:0010700)
 PMID:32888494
None Available GCST90267272 LDL (standard GWA) 269,545 European ancestry individuals T NR 3E-9 8.523 rs1229984 0.046518 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:37106081
GWAS859164_H GCST90243989 Drinks per week 2,965,643 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals C 0.87 5E-324 323.302 rs1229984 0.0822 alcohol consumption measurement (EFO:0007878)
 PMID:36477530
None Available GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals T NR 6E-9 8.222 rs1229984 0.03446 body mass index (EFO:0004340)
 PMID:36376304
GWAS863486_H GCST90255621 Body mass index 1,122,049 European ancestry individuals C NR 3E-16 15.523 rs1229984 0.0391 body mass index (EFO:0004340)
 PMID:36581621
GWAS870287_H GCST90271622 Nonalcoholic fatty liver disease 691,479 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American, South Asian ancestry individuals C 0.95 6E-11 10.222 rs1229984 6.56 non-alcoholic fatty liver disease (EFO:0003095)
 PMID:37709864
GWAS898000_H GCST90432179 Body fat percentage (adjusted for testosterone and SHBG) 157,937 British ancestry males ? NR 2E-9 8.699 rs1229984 0.37 body fat percentage (EFO:0007800)
 PMID:37867527
None Available GCST90269552 Saturated fatty acids to total fatty acids percentage (UKB data field 23455) 88,268 European ancestry individuals T 0.0267934 2E-20 19.699 rs1229984 0.134744 saturated fatty acids to total fatty acids percentage (EFO:0022305)
 PMID:36764567
GWAS909201_H GCST90269711 Phospholipids to total lipids in large LDL percentage (UKB data field 23614) 88,329 European ancestry individuals T 0.0267919 1E-11 11 rs1229984 0.099785 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS917164_H GCST007461 Alcohol consumption (drinks per week) up to 941,280 European ancestry individuals C 0.963 2E-308 307.699 rs1229984 0.15053357 alcohol consumption measurement (EFO:0007878)
 PMID:30643251
GWAS952323_H GCST008258 Alcohol use disorder (consumption score) 200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals C 0.989 1E-19 19 rs1229984 0.412 alcohol use disorder measurement (EFO:0009458)
longitudinal alcohol consumption measurement (EFO:0007645)
 PMID:30940813
GWAS954271_H GCST008258 Alcohol use disorder (consumption score) 200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals C 0.97 5E-102 101.302 rs1229984 0.3402 alcohol use disorder measurement (EFO:0009458)
longitudinal alcohol consumption measurement (EFO:0007645)
 PMID:30940813
GWAS954327_H GCST008259 Alcohol use disorder 34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls C 0.97 5E-74 73.302 rs1229984 1.742 alcohol use disorder measurement (EFO:0009458)
 PMID:30940813
GWAS954332_H GCST008259 Alcohol use disorder 34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls C 0.938 6E-17 16.222 rs1229984 1.7746 alcohol use disorder measurement (EFO:0009458)
 PMID:30940813
GWAS954333_H GCST008259 Alcohol use disorder 34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls C 0.969 5E-85 84.302 rs1229984 19.54 alcohol use disorder measurement (EFO:0009458)
 PMID:30940813
GWAS954846_H GCST008258 Alcohol use disorder (consumption score) 200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals C 0.938 4E-16 15.398 rs1229984 0.349 alcohol use disorder measurement (EFO:0009458)
longitudinal alcohol consumption measurement (EFO:0007645)
 PMID:30940813
GWAS956019_H GCST008258 Alcohol use disorder (consumption score) 200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals C 0.97 4E-133 132.398 rs1229984 24.56 alcohol use disorder measurement (EFO:0009458)
longitudinal alcohol consumption measurement (EFO:0007645)
 PMID:30940813
GWAS965487_H GCST010545 Alcohol use disorder 57,564 European ancestry cases, 256,395 European ancestry controls T 0.0302 3E-107 106.523 rs1229984 22.0 alcohol use disorder measurement (EFO:0009458)
 PMID:32451486
GWAS965489_H GCST010544 Problematic alcohol use (MTAG) 972,915 European ancestry individuals C 0.9698 6E-267 266.222 rs1229984 0.24346012 alcohol use disorder measurement (EFO:0009458)
alcohol consumption measurement (EFO:0007878)
 PMID:32451486
GWAS968777_H GCST010543 Alcohol consumption (drinks per week) (MTAG) 972,915 European ancestry individuals C 0.953 7E-280 279.155 rs1229984 0.15401822 alcohol consumption measurement (EFO:0007878)
 PMID:32451486
None Available GCST010546 Problematic alcohol use 435,563 European ancestry individuals T 0.0302 3E-107 106.523 rs1229984 22.0 alcohol use disorder measurement (EFO:0009458)
 PMID:32451486
None Available GCST008285 Alcohol dependence (tolerance) 3,348 European ancestry cases, 1,110 African American cases, 3,958 European ancestry controls, 2,024 African American controls ? NR 1E-9 9 rs1229984 N/A alcohol dependence measurement (EFO:0007835)
 PMID:31090166
GWAS978761_H GCST008283 Alcohol dependence symptom count 7,418 European ancestry individuals, 3,175 African American individuals ? NR 4E-10 9.398 rs1229984 N/A alcohol dependence measurement (EFO:0007835)
 PMID:31090166
GWAS978888_H GCST006718 Alcohol use disorder (consumption score) 121,604 British ancestry individuals C NR 4E-56 55.398 rs1229984 0.05 alcohol consumption measurement (EFO:0007878)
 PMID:30336701
GWAS978902_H GCST006717 Alcohol use disorder (dependence and problematic use scores) 121,604 British ancestry individuals C NR 1E-45 45 rs1229984 0.04 alcohol dependence measurement (EFO:0007835)
 PMID:30336701
GWAS979280_H GCST008284 Alcohol dependence 2,411 European ancestry cases, 880 African American cases, 2,438 European ancestry controls, 951 African American controls ? NR 5E-9 8.302 rs1229984 N/A PMID:31090166
GWAS980687_H GCST008288 Alcohol dependence (desire to cut drinking) 2,896 European ancestry cases, 1,436 African American cases, 4,413 European ancestry controls, 1,701 African American controls ? NR 1E-17 17 rs1229984 N/A alcohol dependence measurement (EFO:0007835)
 PMID:31090166
GWAS985716_H GCST010988 Adult body size 453,169 European ancestry individuals T 0.0271609 3E-8 7.523 rs1229984 0.02304 body height (EFO:0004339)
 PMID:32376654
GWAS997525_H GCST90019524 Urate levels 342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals C NR 5E-19 18.302 rs1229984 0.0694 urate measurement (EFO:0004531)
 PMID:33462484
None Available GCST90092859 Cholesteryl esters to total lipids ratio in large LDL 115,082 European ancestry individuals T 0.0274543 3E-9 8.523 rs1229984 0.0746017 low density lipoprotein cholesterol measurement (EFO:0004611)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:35213538
GWAS999810_H GCST90092981 Ratio of saturated fatty acids to total fatty acids 115,006 European ancestry individuals T 0.0274594 4E-32 31.398 rs1229984 0.145346 fatty acid measurement (EFO:0005110)
 PMID:35213538
None Available GCST90019526 Vitamin D levels 327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals C NR 4E-9 8.398 rs1229984 0.0469 vitamin D measurement (EFO:0004631)
 PMID:33462484
None Available GCST90019511 Insulin-like growth factor 1 levels 340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals C NR 3E-32 31.523 rs1229984 0.0921 IGF-1 measurement (EFO:0004627)
 PMID:33462484
GWAS1003095_H GCST90092865 Phospholipids to total lipids ratio in large LDL 115,082 European ancestry individuals T 0.0274543 8E-13 12.097 rs1229984 0.0893003 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
GWAS1003260_H GCST90018621 Esophageal cancer 1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls C 0.244615766 2E-46 45.699 rs1229984 0.71232766 esophageal carcinoma (EFO:0002916)
 PMID:34594039
GWAS1003270_H GCST90019512 Low density lipoprotein cholesterol levels 341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals C NR 3E-23 22.523 rs1229984 0.0774 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:33462484
None Available GCST90019522 Serum total protein levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals C NR 1E-17 17 rs1229984 0.0697 blood protein measurement (EFO:0007937)
 PMID:33462484
GWAS1003330_H GCST90102554 Alcohol use disorder 2,254 East Asian ancestry cases, 11,297 East Asian ancestry controls ? NR 3E-17 16.523 rs1229984 N/A alcohol use disorder measurement (EFO:0009458)
 PMID:35094024
None Available GCST90019519 Urinary sodium excretion 332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals C NR 1E-9 9 rs1229984 0.0482 sodium measurement (EFO:0009282)
 PMID:33462484
None Available GCST90018948 Blood urea nitrogen levels 344,052 European ancestry individuals, 148,767 East Asian ancestry individuals C NR 3E-16 15.523 rs1229984 0.0296 blood urea nitrogen measurement (EFO:0004741)
 PMID:34594039
GWAS1003875_H GCST90018949 Weight 360,116 European ancestry individuals, 165,419 East Asian ancestry individuals C NR 5E-10 9.302 rs1229984 0.0185 body weight (EFO:0004338)
 PMID:34594039
GWAS1004195_H GCST90019501 Total cholesterol levels 342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals C NR 1E-16 16 rs1229984 0.0645 total cholesterol measurement (EFO:0004574)
 PMID:33462484
None Available GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 2E-8 7.699 rs1229984 N/A complex trait (EFO:0010578)
 PMID:37277458
None Available GCST90302078 Ratio of saturated fatty acids to total fatty acids 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.1986 8E-13 12.097 rs1229984 0.0804 fatty acid measurement (EFO:0005110)
 PMID:38448586
GWAS1004876_H GCST90000061 Pulse pressure 810,865 European ancestry individuals T 0.0258 3E-24 23.523 rs1229984 0.756563 pulse pressure measurement (EFO:0005763)
 PMID:33230300
None Available GCST90018954 Gamma glutamyl transpeptidase 344,104 European ancestry individuals, 133,471 East Asian ancestry individuals C NR 1E-9 9 rs1229984 0.0225 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:34594039
GWAS1006429_H GCST90274727 Problematic alcohol use 300,789 European ancestry individuals ? NR 4E-68 67.398 rs1229984 N/A alcohol use disorder measurement (EFO:0009458)
 PMID:37250466
GWAS1007330_H GCST90292476 Pulse pressure 1,164,961 European ancestry individuals T 0.0254 3E-25 24.523 rs1229984 0.7580625 pulse pressure measurement (EFO:0005763)
 PMID:33230300
GWAS1007958_H GCST90000062 Systolic blood pressure 810,865 European ancestry individuals T 0.0258 9E-15 14.046 rs1229984 0.8607134 systolic blood pressure (EFO:0006335)
 PMID:33230300
None Available GCST90428467 Oropharyngeal or hypopharyngeal squamous cell carcinoma 331 Chinese ancestry cases, 2,400 Chinese ancestry controls C NR 1E-12 12 rs1229984 1.8277 pharynx cancer (EFO:0005577)
 PMID:37706329
GWAS1009514_H GCST90292477 Systolic blood pressure 1,164,961 European ancestry individuals T 0.0255 6E-16 15.222 rs1229984 0.88558203 systolic blood pressure (EFO:0006335)
 PMID:33230300
None Available GCST90319906 Serum urate levels 677,373 European ancestry individuals T NR 7E-12 11.155 rs1229984 0.0625 urate measurement (EFO:0004531)
 PMID:38658550
GWAS1012414_H GCST90301650 Body mass index 441,761 European ancestry individuals T NR 2E-11 10.699 rs1229984 0.0400103 body mass index (EFO:0004340)
 PMID:37280435
GWAS1014573_H GCST012336 Alcohol use disorder (consumption score) 5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers ? NR 2E-65 64.699 rs1229984 0.592 alcohol use disorder measurement (EFO:0009458)
longitudinal alcohol consumption measurement (EFO:0007645)
 PMID:33861876
None Available GCST90000616 Serum 25-Hydroxyvitamin D levels 417,580 European ancestry individuals T 0.0248886 5E-10 9.302 rs1229984 0.039 vitamin D measurement (EFO:0004631)
 PMID:32242144
GWAS1016537_H GCST90013407 Liver enzyme levels (gamma-glutamyl transferase) 437,194 European ancestry individuals T 0.0264666 2E-14 13.699 rs1229984 0.012214 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:33972514
GWAS1019329_H GCST90319891 Daily alcohol intake in rs671 GG genotype 87,980 Japanese ancestry individuals ? NR 6E-39 38.222 rs1229984 0.134 alcohol consumption measurement (EFO:0007878)
 PMID:38277453
GWAS1019331_H GCST90319892 Alcohol drinking status in rs671 GG genotype 64,727 Japanese ancestry ever-drinkers, 37,306 Japanese ancestry never-drinkers ? NR 2E-24 23.699 rs1229984 1.14 alcohol drinking (EFO:0004329)
 PMID:38277453
GWAS1019974_H GCST90319890 Alcohol drinking status (ever drinker vs never drinker) 86,878 Japanese ancestry ever-drinkers, 88,794 Japanese ancestry never-drinkers ? NR 2E-73 72.699 rs1229984 1.18 alcohol drinking (EFO:0004329)
 PMID:38277453
GWAS1019975_H GCST90319893 Daily alcohol intake in rs671 GA genotype 55,779 Japanese ancestry individuals ? NR 3E-101 100.523 rs1229984 0.243 alcohol consumption measurement (EFO:0007878)
 PMID:38277453
GWAS1019977_H GCST90319894 Alcohol drinking status in rs671 GA genotype 21,498 Japanese ancestry ever-drinkers, 40,939 Japanese ancestry never-drinkers ? NR 4E-86 85.398 rs1229984 1.37 alcohol drinking (EFO:0004329)
 PMID:38277453
GWAS1019983_H GCST90319895 Daily alcohol intake x rs671 interaction (2df) 143,759 Japanese ancestry individuals ? NR 3E-95 94.523 rs1229984 N/A alcohol consumption measurement (EFO:0007878)
carrier status (EFO:0007658)
 PMID:38277453
GWAS1019984_H GCST90319896 Alcohol drinking status x rs671 interaction (2df) 86,225 Japanese ancestry ever-drinkers, 78,245 Japanese ancestry never-drinkers ? NR 7E-100 99.155 rs1229984 N/A carrier status (EFO:0007658)
alcohol drinking (EFO:0004329)
 PMID:38277453
GWAS1019986_H GCST90319889 Daily alcohol intake 154,570 Japanese ancestry individuals ? NR 6E-91 90.222 rs1229984 0.168 alcohol consumption measurement (EFO:0007878)
 PMID:38277453
None Available GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals C NR 6E-12 11.222 rs1229984 0.0559 serum albumin measurement (EFO:0004535)
 PMID:33462484
GWAS1024192_H GCST012338 Gout 7,049 European ancestry cases, 64,424 European ancestry controls T 0.02 5E-23 22.302 rs1229984 1.75 gout (EFO:0004274)
 PMID:33832965
GWAS1024201_H GCST012339 Gout vs asymptomatic hyperuricemia 4,934 European ancestry cases, 56,948 European ancestry controls T 0.03 1E-15 15 rs1229984 1.49 gout (EFO:0004274)
 PMID:33832965
GWAS1026164_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals C NR 1E-24 24 rs1229984 0.0797 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
GWAS1026448_H GCST90019496 Apolipoprotein B levels 340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals C NR 3E-13 12.523 rs1229984 0.0567 apolipoprotein B measurement (EFO:0004615)
 PMID:33462484
GWAS1028194_H GCST90243983 Drinks per week 121,859 East Asian ancestry individuals C 0.2878 5E-63 62.302 rs1229984 0.0653 alcohol consumption measurement (EFO:0007878)
 PMID:36477530
GWAS1028205_H GCST90243982 Drinks per week 274,707 Hispanic or Latin American individuals C 0.9273 2E-157 156.699 rs1229984 0.139142 alcohol consumption measurement (EFO:0007878)
 PMID:36477530
GWAS1029274_H GCST90245748 X-24422 levels 14,296 European ancestry individuals T 0.031 6E-31 30.222 rs1229984 0.34922126 X-24422 measurement (EFO:0800880)
 PMID:36357675
GWAS1029695_H GCST90244188 Maximum habitual alcohol consumption (MTAG) 353,981 European ancestry individuals ? NR 3E-176 175.523 rs1229984 0.19434102 alcohol consumption measurement (EFO:0007878)
 PMID:36301540
GWAS1029697_H GCST90244189 Problematic alcohol use (MTAG) 422,491 European ancestry individuals ? NR 2E-182 181.699 rs1229984 0.2214 alcohol consumption measurement (EFO:0007878)
 PMID:36301540
GWAS1029699_H GCST90244185 Maximum habitual alcohol consumption 29,132 African ancestry individuals, 218,623 European ancestry individuals ? NR 2E-101 100.699 rs1229984 N/A alcohol consumption measurement (EFO:0007878)
 PMID:36301540
None Available GCST90244186 Maximum habitual alcohol consumption 218,623 European ancestry individuals ? NR 3E-101 100.523 rs1229984 N/A alcohol consumption measurement (EFO:0007878)
 PMID:36301540
None Available GCST90267367 Body composition (MOSTest) 33,588 European ancestry individuals ? NR 2E-9 8.699 rs1229984 5.98 body composition measurement (EFO:0005106)
 PMID:36402844
GWAS1029892_H GCST90267352 Liver proton density fat fraction 33,235 European ancestry individuals T 0.03 9E-14 13.046 rs1229984 7.45 liver fat measurement (EFO:0010821)
 PMID:36402844
GWAS1030052_H GCST90032649 Relative fat intake 282,271 European ancestry individuals T 0.0445 1E-22 22 rs1229984 0.5206 fat intake measurement (EFO:0010809)
 PMID:34426670
GWAS1030062_H GCST90032650 Relative protein intake 282,271 European ancestry individuals A 0.5963 3E-14 13.523 rs1229984 0.0728 protein intake measurement (EFO:0010810)
 PMID:34426670
GWAS1030089_H GCST90132992 Alcohol consumption (drinks per month) (UKB data field 1578, 4424) 449,210 European ancestry individuals T 0.025062 4E-248 247.398 rs1229984 0.226432 alcohol consumption measurement (EFO:0007878)
 PMID:32193382
GWAS1030301_H GCST90239693 Risk-taking behavior (multivariate analysis) 1,506,537 European ancestry individuals ? NR 5E-12 11.302 rs1229984 N/A risk-taking behaviour (EFO:0008579)
 PMID:36324656
None Available GCST012213 Aerodigestive squamous cell cancer (pleiotropy) 7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls T 0.05 2E-9 8.699 rs1229984 0.8 upper aerodigestive tract neoplasm (EFO:0004284)
 PMID:33667223
GWAS1035717_H GCST90245528 X-12127 levels 14,296 European ancestry individuals T 0.0312 1E-13 13 rs1229984 0.2193142 X-12127 measurement (EFO:0800709)
 PMID:36357675
GWAS1036288_H GCST90243984 Drinks per week 2,428,851 European ancestry individuals C 0.973 6E-284 283.222 rs1229984 0.193 alcohol consumption measurement (EFO:0007878)
 PMID:36477530
None Available GCST90179146 C-reactive protein levels (MTAG) 575,531 European ancestry individuals T NR 3E-8 7.523 rs1229984 0.03207 C-reactive protein measurement (EFO:0004458)
 PMID:36376304
None Available GCST90085701 Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer 2,359 European ancestry cases, 565 European ancestry controls G NR 4E-8 7.398 rs1229984 0.5916 human papilloma virus infection (EFO:0001668)
oral cavity cancer (EFO:0005570)
 PMID:34642315
None Available GCST90012112 Total testosterone levels 230,454 European ancestry women C 0.9763163 1E-8 8 rs1229984 0.0489634 testosterone measurement (EFO:0004908)
 PMID:32042192
None Available GCST90428730 Gamma glutamyl transferase levels 875,069 European ancestry individuals T NR 3E-16 15.523 rs1229984 0.0132 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:38632349
GWAS1039134_H GCST90018841 Esophageal cancer 998 European ancestry cases, 475,308 European ancestry controls, 1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls C NR 3E-45 44.523 rs1229984 0.6715 esophageal carcinoma (EFO:0002916)
 PMID:34594039
None Available GCST90100220 Estimated glomerular filtration rate (creatinine) 1,205,871 European ancestry individuals, 168,300 East Asian ancestry individuals, 63,553 African ancestry individuals, 23,509 Hispanic or Latin American individuals, 22,103 African American individuals, 21,791 Central Asian or South Asian ancestry individuals, 1,502 Middle Eastern ancestry individuals, 939 other admixed ancestry individuals, 602 Native American ancestry individuals, 150 Asian ancestry individuals, 339 individuals C 0.756 2E-9 8.699 rs1229984 5.968 glomerular filtration rate (EFO:0005208)
 PMID:35710981
None Available GCST90299640 Metabolite levels (hexadecanedioate; hexadecanedioate (C16-DC)) 9,331 European, Hispanic or African American individuals C 0.9587 1E-11 11 rs1229984 0.252 hexadecanedioate measurement (EFO:0021055)
 PMID:37253714
GWAS1040667_H GCST90018947 Body mass index 359,983 European ancestry individuals, 163,835 East Asian ancestry individuals C NR 5E-17 16.302 rs1229984 0.0292 body mass index (EFO:0004340)
 PMID:34594039
GWAS1042370_H GCST90299730 Metabolite levels (octadecanedioate; octadecanedioate (C18-DC)) 8,915 European, Hispanic or African American individuals C 0.9588 3E-12 11.523 rs1229984 0.267 octadecanedioate measurement (EFO:0021056)
 PMID:37253714
GWAS1042655_H GCST90301666 Alcohol use disorder (consumption score) 31,877 Hispanic American individuals T 0.0654 3E-50 49.523 rs1229984 0.7686 alcohol consumption measurement (EFO:0007878)
 PMID:37282553
GWAS1042657_H GCST90301659 Alcohol use disorder 296,989 European ancestry individuals, 80,764 African American individuals, 31,877 Hispanic American individuals T 0.0338 7E-162 161.155 rs1229984 27.11 alcohol use disorder measurement (EFO:0009458)
 PMID:37282553
GWAS1042668_H GCST90301660 Alcohol use disorder 296,989 European ancestry individuals T 0.03662 1E-131 131 rs1229984 0.5576 alcohol use disorder measurement (EFO:0009458)
 PMID:37282553
GWAS1042676_H GCST90301662 Alcohol use disorder 31,877 Hispanic American individuals T 0.0654 5E-37 36.302 rs1229984 0.5666 alcohol use disorder measurement (EFO:0009458)
 PMID:37282553
None Available GCST90019525 Urea levels 342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals C NR 2E-23 22.699 rs1229984 0.0775 serum urea measurement (EFO:0009795)
 PMID:33462484
GWAS1043197_H GCST90134472 Alanine aminotransferase levels 5,694 African ancestry individuals, 1,988 East Asian ancestry individuals, 336,298 European ancestry individuals, 6,036 South Asian ancestry individuals ? NR 1E-14 14 rs1229984 N/A serum alanine aminotransferase measurement (EFO:0004735)
 PMID:35810165
GWAS1043285_H GCST90301663 Alcohol use disorder (consumption score) 296,989 European ancestry individuals, 80,764 African American individuals, 31,877 Hispanic American individuals T 0.0337 7E-229 228.155 rs1229984 32.299 alcohol consumption measurement (EFO:0007878)
 PMID:37282553
GWAS1043286_H GCST90301664 Alcohol use disorder (consumption score) 296,989 European ancestry individuals T 0.03662 7E-173 172.155 rs1229984 0.5775 alcohol consumption measurement (EFO:0007878)
 PMID:37282553
None Available GCST90132287 Ideal cardiovascular health score (clinical and behavioral) 119,129 European ancestry individuals, 16,495 African American individuals, 6,780 Hispanic individuals T 0.96 2E-9 8.699 rs1229984 0.1 clinical and behavioural ideal cardiovascular health (EFO:0007654)
 PMID:35613103
GWAS1044519_H GCST90094737 F-coffee/alcohol liking (derived food-liking factor) 158,095 European ancestry individuals C 0.9745 6E-14 13.222 rs1229984 0.322925 taste liking measurement (EFO:0010155)
 PMID:35585065
None Available GCST90239667 Non-HDL cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 3E-14 13.523 rs1229984 N/A non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1047343_H GCST90094872 F-wine liking (derived food-liking factor) 158,478 European ancestry individuals C 0.9745 2E-42 41.699 rs1229984 0.153736 taste liking measurement (EFO:0010155)
 PMID:35585065
None Available GCST90094705 Bitter ale liking 155,103 European ancestry individuals C 0.9745 5E-9 8.302 rs1229984 0.065969 taste liking measurement (EFO:0010155)
 PMID:35585065
GWAS1048233_H GCST90094688 Alcohol liking 157,286 European ancestry individuals C 0.9745 3E-27 26.523 rs1229984 0.425957 taste liking measurement (EFO:0010155)
 PMID:35585065
None Available GCST90094789 Lager liking 156,958 European ancestry individuals C 0.9745 5E-9 8.302 rs1229984 0.065856 taste liking measurement (EFO:0010155)
 PMID:35585065
None Available GCST90435413 Body mass index 403,610 European ancestry individuals ? NR 1E-8 8 rs1229984 0.0400974 body mass index (EFO:0004340)
 PMID:39134668
None Available GCST90435415 Systolic blood pressure 404,507 European ancestry individuals ? NR 1E-20 20 rs1229984 0.0608682 systolic blood pressure (EFO:0006335)
 PMID:39134668
GWAS1064656_H GCST90310296 Pulse pressure 1,028,980 European ancestry individuals C NR 4E-17 16.398 rs1229984 0.5111 pulse pressure measurement (EFO:0005763)
 PMID:38689001
None Available GCST90310294 Systolic blood pressure 1,028,980 European ancestry individuals C NR 2E-11 10.699 rs1229984 0.5988 systolic blood pressure (EFO:0006335)
 PMID:38689001
Database Acc Id Source(s)
GWAS Catalog GCST003859 GWAS Catalog

RGD Curation Notes
Note Type Note Reference