GWAS675570_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS675570_H (serum IgG glycosylation measurement QTL GWAS675570 (human)) Homo sapiens

Symbol: GWAS675570_H
Name: serum IgG glycosylation measurement QTL GWAS675570 (human)
RGD ID: 407026594
Trait: serum IgG glycosylation measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381533,201,020 - 33,201,021RGD_MAPPER_PIPELINEGRCh38
GRCh371533,493,221 - 33,493,222RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS675570_HHumanserum IgG glycosylation measurement  IAGPrs6494964405850206 GWAS_CATALOGPMID:23382691
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38675106LOC105370759uncharacterized LOC105370759153319491133204548Human

Position Markers

Peak: (rs6494964)
Human AssemblyChrPosition (strand)Source
GRCh381533,201,020 - 33,201,021RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407026594GWAS675570_Hserum IgG glycosylation measurement QTL GWAS675570 (human)0.000008serum IgG glycosylation measurement153320102033201021Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407026524GWAS675500_Hserum IgG glycosylation measurement QTL GWAS675500 (human)0.000006serum IgG glycosylation measurement153320102033201021Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS675500_H GCST001848 IgG glycosylation 2,247 European ancestry individuals G 0.686050906432748 0.000006 5.222 rs6494964 0.1846 serum IgG glycosylation measurement (EFO:0005193)
 PMID:23382691
GWAS675570_H GCST001848 IgG glycosylation 2,247 European ancestry individuals G 0.685883860674157 0.000008 5.097 rs6494964 0.1819 serum IgG glycosylation measurement (EFO:0005193)
 PMID:23382691
Database Acc Id Source(s)
GWAS Catalog GCST001848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference