GWAS675565_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS675565_H (2-ketocaprylate measurement QTL GWAS675565 (human)) Homo sapiens

Symbol: GWAS675565_H
Name: 2-ketocaprylate measurement QTL GWAS675565 (human)
RGD ID: 407026589
Trait: 2-ketocaprylate measurement
LOD Score: Not Available
P Value: 1.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38315,586,533 - 15,586,534RGD_MAPPER_PIPELINEGRCh38
GRCh37315,628,040 - 15,628,041RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS675565_HHuman2-ketocaprylate measurement  IAGPrs74637339405850206 GWAS_CATALOGPMID:36635386
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1607054HACL12-hydroxyacyl-CoA lyase 131556069915601569Human

Position Markers

Peak: (rs74637339)
Human AssemblyChrPosition (strand)Source
GRCh38315,586,533 - 15,586,534RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407025329GWAS674305_HX-18913 measurement QTL GWAS674305 (human)2e-16X-18913 measurement31558653315586534Human
407026278GWAS675254_H2-hydroxysebacate measurement QTL GWAS675254 (human)4e-262-hydroxysebacate measurement31558653315586534Human
407024628GWAS673604_H2-hydroxyoctanoate measurement QTL GWAS673604 (human)3e-102-hydroxyoctanoate measurement31558653315586534Human
406929079GWAS578055_H2-aminooctanoate measurement QTL GWAS578055 (human)2e-132-aminooctanoate measurement31558653315586534Human
406919814GWAS568790_HN-acetyl-2-aminooctanoate measurement QTL GWAS568790 (human)6e-13N-acetyl-2-aminooctanoate measurement31558653315586534Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407026589GWAS675565_H2-ketocaprylate measurement QTL GWAS675565 (human)1e-152-ketocaprylate measurement31558653315586534Human
406928830GWAS577806_H2-hydroxyoctanoate measurement QTL GWAS577806 (human)4e-112-hydroxyoctanoate measurement31558653315586534Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS568790_H GCST90103072 N-acetyl-2-aminooctanoate (X-12511) levels 8,809 European ancestry individuals A NR 6E-13 12.222 rs74637339 0.24 N-acetyl-2-aminooctanoate measurement (EFO:0800567)
 PMID:35050183
GWAS577806_H GCST90102778 2-hydroxyoctanoate levels 8,809 European ancestry individuals A NR 4E-11 10.398 rs74637339 0.241 2-hydroxyoctanoate measurement (EFO:0800192)
 PMID:35050183
GWAS578055_H GCST90102768 2-aminooctanoate levels 8,809 European ancestry individuals A NR 2E-13 12.699 rs74637339 0.251 2-aminooctanoate measurement (EFO:0800349)
 PMID:35050183
GWAS673604_H GCST90199681 2-hydroxyoctanoate levels 8,224 European ancestry individuals A 0.0521596 3E-10 9.523 rs74637339 0.218791 2-hydroxyoctanoate measurement (EFO:0800192)
 PMID:36635386
GWAS674305_H GCST90200569 X-18913 levels 8,271 European ancestry individuals A 0.0522804 2E-16 15.699 rs74637339 0.283633 X-18913 measurement (EFO:0800795)
 PMID:36635386
GWAS675254_H GCST90200198 2-hydroxysebacate levels 7,865 European ancestry individuals A 0.0528901 4E-26 25.398 rs74637339 0.362955 2-hydroxysebacate measurement (EFO:0800571)
 PMID:36635386
GWAS675565_H GCST90200224 2-ketocaprylate levels 8,240 European ancestry individuals A 0.0525451 1E-15 15 rs74637339 0.277383 2-ketocaprylate measurement (EFO:0800110)
 PMID:36635386
Database Acc Id Source(s)
GWAS Catalog GCST90200224 GWAS Catalog

RGD Curation Notes
Note Type Note Reference