GWAS668139_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS668139_H (electrocardiography QTL GWAS668139 (human)) Homo sapiens

Symbol: GWAS668139_H
Name: electrocardiography QTL GWAS668139 (human)
RGD ID: 407019163
Trait: electrocardiography
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381766,325,449 - 66,325,450RGD_MAPPER_PIPELINEGRCh38
GRCh371764,321,567 - 64,321,568RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS668139_HHumanelectrocardiography  IAGPrs8071250405850206 GWAS_CATALOGPMID:32602732
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
737062PRKCAprotein kinase C alpha176630261366810743Human

Position Markers

Peak: (rs8071250)
Human AssemblyChrPosition (strand)Source
GRCh381766,325,449 - 66,325,450RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407313479GWAS962455_HJT interval QTL GWAS962455 (human)8e-99JT intervalheart electrical conduction measurement (CMO:0000230)176632544966325450Human
407019163GWAS668139_Helectrocardiography QTL GWAS668139 (human)1e-11electrocardiography176632544966325450Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS668139_H GCST011010 Electrocardiographic traits (multivariate) 17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals ? NR 1E-11 11 rs8071250 N/A electrocardiography (EFO:0004327)
 PMID:32602732
GWAS962455_H GCST90179157 JT interval 252,730 European ancestry, African ancestry, Hispanic or Latin American, South East Asian ancestry, South Asian ancestry individuals T 0.5784 8E-99 98.097 rs8071250 0.0626 JT interval (EFO:0007885)
 PMID:36050321
Database Acc Id Source(s)
GWAS Catalog GCST011010 GWAS Catalog

RGD Curation Notes
Note Type Note Reference