GWAS665502_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS665502_H (unipolar depression QTL GWAS665502 (human)) Homo sapiens

Symbol: GWAS665502_H
Name: unipolar depression QTL GWAS665502 (human)
RGD ID: 407016526
Trait: unipolar depression
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381223,794,803 - 23,794,804RGD_MAPPER_PIPELINEGRCh38
GRCh371223,947,737 - 23,947,738RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Depression  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603322SOX5SRY-box transcription factor 5122352950424562650Human

Position Markers

Peak: (rs4074723)
Human AssemblyChrPosition (strand)Source
GRCh381223,794,803 - 23,794,804RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406908721GWAS557697_Hunipolar depression, bipolar disorder QTL GWAS557697 (human)3e-09unipolar depression, bipolar disorder122379480323794804Human
407016526GWAS665502_Hunipolar depression QTL GWAS665502 (human)3e-08unipolar depression122379480323794804Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST010416 Bipolar disorder or major depressive disorder 164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls C NR 3E-9 8.523 rs4074723 1.0309278 PMID:31926635
None Available GCST005839 Depression 135,458 European ancestry cases, 344,901 European ancestry controls C 0.59 3E-8 7.523 rs4074723 1.0309278 PMID:29700475
Database Acc Id Source(s)
GWAS Catalog GCST005839 GWAS Catalog

RGD Curation Notes
Note Type Note Reference