GWAS655886_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS655886_H (eye color QTL GWAS655886 (human)) Homo sapiens

Symbol: GWAS655886_H
Name: eye color QTL GWAS655886 (human)
RGD ID: 407006910
Trait: eye color
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381527,951,675 - 27,951,676RGD_MAPPER_PIPELINEGRCh38
GRCh371528,196,821 - 28,196,822RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS655886_HHumaneye color  IAGPrs7173419405850206 GWAS_CATALOGPMID:23548203
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352949OCA2OCA2 melanosomal transmembrane protein152771900828099315Human

Position Markers

Peak: (rs7173419)
Human AssemblyChrPosition (strand)Source
GRCh381527,951,675 - 27,951,676RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407006910GWAS655886_Heye color QTL GWAS655886 (human)0.0000001eye color152795167527951676Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS655886_H GCST001929 Eye color 3871 European ancestry individuals T NR 1E-7 7 rs7173419 0.33 eye color (EFO:0003949)
 PMID:23548203
Database Acc Id Source(s)
GWAS Catalog GCST001929 GWAS Catalog

RGD Curation Notes
Note Type Note Reference