GWAS644949_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS644949_H (daytime rest measurement QTL GWAS644949 (human)) Homo sapiens

Symbol: GWAS644949_H
Name: daytime rest measurement QTL GWAS644949 (human)
RGD ID: 406995973
Trait: daytime rest measurement
LOD Score: Not Available
P Value: 5.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38319,335,819 - 19,335,820RGD_MAPPER_PIPELINEGRCh38
GRCh37319,377,311 - 19,377,312RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS644949_HHumandaytime rest measurement  IAGPrs77154532405850206 GWAS_CATALOGPMID:33568662
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352658KCNH8potassium voltage-gated channel subfamily H member 831914851019535642Human

Position Markers

Peak: (rs77154532)
Human AssemblyChrPosition (strand)Source
GRCh38319,335,819 - 19,335,820RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406995973GWAS644949_Hdaytime rest measurement QTL GWAS644949 (human)5e-12daytime rest measurement31933581919335820Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS644949_H GCST011494 Daytime nap 452,633 European ancestry individuals A NR 5E-12 11.302 rs77154532 0.0062 daytime rest measurement (EFO:0007828)
 PMID:33568662
Database Acc Id Source(s)
GWAS Catalog GCST011494 GWAS Catalog

RGD Curation Notes
Note Type Note Reference