GWAS640560_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS640560_H (body height QTL GWAS640560 (human)) Homo sapiens

Symbol: GWAS640560_H
Name: body height QTL GWAS640560 (human)
RGD ID: 406991584
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38X105,908,290 - 105,908,291RGD_MAPPER_PIPELINEGRCh38
GRCh37X105,152,282 - 105,152,283RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS640560_HHumanbody height  IAGPrs209373405850206Based on the EFO term IDGWAS_CATALOGPMID:31217584

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS640560_HHumanbody height  IAGPrs209373405850206Based on the EFO term IDGWAS_CATALOGPMID:31217584

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS640560_HHumanbody height  IAGPrs209373405850206 GWAS_CATALOGPMID:31217584
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344667NRKNik related kinaseX105821786105958610Human

Position Markers

Peak: (rs209373)
Human AssemblyChrPosition (strand)Source
GRCh38X105,908,290 - 105,908,291RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406991584GWAS640560_Hbody height QTL GWAS640560 (human)0.000007body height (VT:0001253)body height (CMO:0000106)X105908290105908291Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS640560_H GCST008053 Height 17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals ? NR 0.000007 5.155 rs209373 0.02586041 body height (EFO:0004339)
 PMID:31217584
Database Acc Id Source(s)
GWAS Catalog GCST008053 GWAS Catalog

RGD Curation Notes
Note Type Note Reference