GWAS640033_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS640033_H (trait in response to triamcinolone acetonide, ocular hypertension QTL GWAS640033 (human)) Homo sapiens

Symbol: GWAS640033_H
Name: trait in response to triamcinolone acetonide, ocular hypertension QTL GWAS640033 (human)
RGD ID: 406991057
Trait: trait in response to triamcinolone acetonide, ocular hypertension
LOD Score: Not Available
P Value: 7.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3839,842,025 - 9,842,026RGD_MAPPER_PIPELINEGRCh38
GRCh3739,883,709 - 9,883,710RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1351633RPUSD3RNA pseudouridine synthase D3398378499844008Human

Position Markers

Peak: (rs144616051)
Human AssemblyChrPosition (strand)Source
GRCh3839,842,025 - 9,842,026RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406991057GWAS640033_Htrait in response to triamcinolone acetonide, ocular hypertension QTL GWAS640033 (human)7e-13trait in response to triamcinolone acetonide, ocular hypertension398420259842026Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS640033_H GCST90244659 Triamcinolone acetonide-induced ocular hypertension 52 Indian ancestry individuals ? NR 7E-13 12.155 rs144616051 N/A ocular hypertension (EFO:1001069)
 PMID:36222912
Database Acc Id Source(s)
GWAS Catalog GCST90244659 GWAS Catalog

RGD Curation Notes
Note Type Note Reference