GWAS639370_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS639370_H (lipoprotein A measurement, apolipoprotein A 1 measurement QTL GWAS639370 (human)) Homo sapiens

Symbol: GWAS639370_H
Name: lipoprotein A measurement, apolipoprotein A 1 measurement QTL GWAS639370 (human)
RGD ID: 406990394
Trait: lipoprotein A measurement, apolipoprotein A 1 measurement
Measurement Type: blood apolipoprotein AI level   (CMO:0000520)    
LOD Score: Not Available
P Value: 8.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,233,083 - 161,233,084RGD_MAPPER_PIPELINEGRCh38
GRCh376161,654,115 - 161,654,116RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS639370_HHumanblood apolipoprotein AI level  IAGPrs9295143405850206Based on the EFO term IDGWAS_CATALOGPMID:28512139

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS639370_HHumanapolipoprotein A 1 measurement  IAGPrs9295143405850206 GWAS_CATALOGPMID:28512139
GWAS639370_HHumanlipoprotein A measurement  IAGPrs9295143405850206 GWAS_CATALOGPMID:28512139
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1354001AGPAT41-acylglycerol-3-phosphate O-acyltransferase 46161129967161274061Human

Position Markers

Peak: (rs9295143)
Human AssemblyChrPosition (strand)Source
GRCh386161,233,083 - 161,233,084RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406990394GWAS639370_Hlipoprotein A measurement, apolipoprotein A 1 measurement QTL GWAS639370 (human)8e-09lipoprotein A measurement, apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)6161233083161233084Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS639370_H GCST004399 Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms 13,781 European ancestry individuals G NR 8E-9 8.097 rs9295143 3.01 lipoprotein A measurement (EFO:0006925)
apolipoprotein A 1 measurement (EFO:0004614)
 PMID:28512139
Database Acc Id Source(s)
GWAS Catalog GCST004399 GWAS Catalog

RGD Curation Notes
Note Type Note Reference