GWAS636813_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS636813_H (neuroticism measurement QTL GWAS636813 (human)) Homo sapiens

Symbol: GWAS636813_H
Name: neuroticism measurement QTL GWAS636813 (human)
RGD ID: 406987837
Trait: depressive symptom measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38318,581,798 - 18,581,799RGD_MAPPER_PIPELINEGRCh38
GRCh37318,623,290 - 18,623,291RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS636813_HHumandepressive symptom measurement  IAGPrs2102649405850206 GWAS_CATALOGPMID:30643256
GWAS636813_HHumanneuroticism measurement  IAGPrs2102649405850206 GWAS_CATALOGPMID:30643256
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2102649)
Human AssemblyChrPosition (strand)Source
GRCh38318,581,798 - 18,581,799RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
406987837GWAS636813_Hneuroticism measurement QTL GWAS636813 (human)3e-08neuroticism measurement31858179818581799Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS636813_H GCST007339 Neuroticism 523,783 European ancestry individuals G 0.373191496946233 3E-8 7.523 rs2102649 0.0084360875 neuroticism measurement (EFO:0007660)
 PMID:30643256
None Available GCST007340 Depressive symptoms 1,067,913 European ancestry individuals G 0.373191496946233 3E-8 7.523 rs2102649 0.005380599 depressive symptom measurement (EFO:0007006)
 PMID:30643256
Database Acc Id Source(s)
GWAS Catalog GCST007339 GWAS Catalog
  GCST007340 GWAS Catalog

RGD Curation Notes
Note Type Note Reference