GWAS635963_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS635963_H (mean corpuscular volume QTL GWAS635963 (human)) Homo sapiens

Symbol: GWAS635963_H
Name: mean corpuscular volume QTL GWAS635963 (human)
RGD ID: 406986987
Trait: mean corpuscular volume
Measurement Type: mean corpuscular volume   (CMO:0000038)    
LOD Score: Not Available
P Value: 1.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386159,988,862 - 159,988,863RGD_MAPPER_PIPELINEGRCh38
GRCh376160,409,894 - 160,409,895RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS635963_HHumanmean corpuscular volume  IAGPrs75474551405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS635963_HHumanmean corpuscular volume  IAGPrs75474551405850206 GWAS_CATALOGPMID:32888493
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
732660IGF2Rinsulin like growth factor 2 receptor6159969082160111504Human

Position Markers

Peak: (rs75474551)
Human AssemblyChrPosition (strand)Source
GRCh386159,988,862 - 159,988,863RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407310628GWAS959604_Hcitrate measurement QTL GWAS959604 (human)4e-10citrate measurement6159988862159988863Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406998324GWAS647300_Hmean corpuscular volume QTL GWAS647300 (human)3e-10mean corpuscular volumemean corpuscular volume (CMO:0000038)6159988862159988863Human
406986987GWAS635963_Hmean corpuscular volume QTL GWAS635963 (human)1e-12mean corpuscular volumemean corpuscular volume (CMO:0000038)6159988862159988863Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS635963_H GCST90002334 Mean corpuscular volume 544,127 European ancestry individuals T 0.092198 1E-12 12 rs75474551 0.022866 mean corpuscular volume (EFO:0004526)
 PMID:32888493
GWAS647300_H GCST90002338 Mean corpuscular volume 696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.0724036 3E-10 9.523 rs75474551 N/A mean corpuscular volume (EFO:0004526)
 PMID:32888493
GWAS959604_H GCST90092813 Citrate levels 115,068 European ancestry individuals G 0.908395 4E-10 9.398 rs75474551 0.0438907 citrate measurement (EFO:0010114)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90002334 GWAS Catalog

RGD Curation Notes
Note Type Note Reference