GWAS627058_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS627058_H (white matter microstructure measurement QTL GWAS627058 (human)) Homo sapiens

Symbol: GWAS627058_H
Name: white matter microstructure measurement QTL GWAS627058 (human)
RGD ID: 406978082
Trait: white matter microstructure measurement
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38313,793,590 - 13,793,591RGD_MAPPER_PIPELINEGRCh38
GRCh37313,835,087 - 13,835,088RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS627058_HHumanwhite matter microstructure measurement  IAGPrs6442409405850206 GWAS_CATALOGPMID:31666681
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs6442409)
Human AssemblyChrPosition (strand)Source
GRCh38313,793,590 - 13,793,591RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407264438GWAS913414_Hneuroimaging measurement QTL GWAS913414 (human)4e-10neuroimaging measurement31379359013793591Human
406978082GWAS627058_Hwhite matter microstructure measurement QTL GWAS627058 (human)5e-08white matter microstructure measurement31379359013793591Human
407260098GWAS909074_Hneuroimaging measurement QTL GWAS909074 (human)8e-11neuroimaging measurement31379359013793591Human
407215457GWAS864433_Hneuroimaging measurement QTL GWAS864433 (human)3e-08neuroimaging measurement31379359013793591Human
407214595GWAS863571_Hneuroimaging measurement QTL GWAS863571 (human)1e-10neuroimaging measurement31379359013793591Human
407262654GWAS911630_Hneuroimaging measurement QTL GWAS911630 (human)9e-11neuroimaging measurement31379359013793591Human
407263486GWAS912462_Hwhite matter integrity QTL GWAS912462 (human)2e-10white matter integrity31379359013793591Human
407215517GWAS864493_Hneuroimaging measurement QTL GWAS864493 (human)7e-09neuroimaging measurement31379359013793591Human
407263519GWAS912495_Hwhite matter integrity QTL GWAS912495 (human)2e-08white matter integrity31379359013793591Human
407257919GWAS906895_Hwhite matter integrity QTL GWAS906895 (human)3e-13white matter integrity31379359013793591Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407278028GWAS927004_Hwhite matter integrity, age at assessment QTL GWAS927004 (human)5e-10white matter integrity, age at assessment31379359013793591Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS627058_H GCST009537 White matter microstructure (axial diusivities) 17,706 European ancestry individuals ? NR 5E-8 7.302 rs6442409 N/A white matter microstructure measurement (EFO:0005674)
 PMID:31666681
GWAS863571_H GCST90003814 wg lh intensity-contrast posteriorcingulate 21,281 British ancestry individuals C 0.655 1E-10 10 rs6442409 0.066 neuroimaging measurement (EFO:0004346)
 PMID:33875891
GWAS864433_H GCST90003803 wg lh intensity-contrast lateralorbitofrontal 21,282 British ancestry individuals C 0.655 3E-8 7.523 rs6442409 0.057 neuroimaging measurement (EFO:0004346)
 PMID:33875891
GWAS864493_H GCST90003838 wg rh intensity-contrast lateralorbitofrontal 21,282 British ancestry individuals C 0.655 7E-9 8.155 rs6442409 0.059 neuroimaging measurement (EFO:0004346)
 PMID:33875891
GWAS906895_H GCST90004077 IDP dMRI TBSS L1 Genu of corpus callosum 20,860 British ancestry individuals C 0.655 3E-13 12.523 rs6442409 0.075 white matter integrity (EFO:0004641)
 PMID:33875891
GWAS909074_H GCST90003857 wg rh intensity-contrast supramarginal 21,282 British ancestry individuals C 0.655 8E-11 10.097 rs6442409 0.067 neuroimaging measurement (EFO:0004346)
 PMID:33875891
GWAS911630_H GCST90004359 IDP dMRI TBSS ICVF External capsule R 20,859 British ancestry individuals C 0.655 9E-11 10.046 rs6442409 0.067 neuroimaging measurement (EFO:0004346)
 PMID:33875891
None Available GCST90004360 IDP dMRI TBSS ICVF External capsule L 20,859 British ancestry individuals C 0.655 7E-9 8.155 rs6442409 0.06 neuroimaging measurement (EFO:0004346)
 PMID:33875891
GWAS912462_H GCST90004257 IDP dMRI ProbtrackX L1 fmi 20,860 British ancestry individuals C 0.655 2E-10 9.699 rs6442409 0.066 white matter integrity (EFO:0004641)
 PMID:33875891
GWAS912495_H GCST90004098 IDP dMRI TBSS L1 Anterior corona radiata L 20,860 British ancestry individuals C 0.655 2E-8 7.699 rs6442409 0.058 white matter integrity (EFO:0004641)
 PMID:33875891
GWAS913414_H GCST90004343 IDP dMRI TBSS ICVF Anterior limb of internal capsule R 20,859 British ancestry individuals C 0.655 4E-10 9.398 rs6442409 0.065 neuroimaging measurement (EFO:0004346)
 PMID:33875891
None Available GCST90004398 IDP dMRI ProbtrackX ICVF str l 20,859 British ancestry individuals C 0.655 3E-8 7.523 rs6442409 0.057 neuroimaging measurement (EFO:0004346)
 PMID:33875891
GWAS927004_H GCST90100583 White matter mean diffusivity x age interaction (2df) 31,128 British ancestry individuals T 0.35 5E-10 9.302 rs6442409 N/A white matter integrity (EFO:0004641)
age at assessment (EFO:0008007)
 PMID:34358307
Database Acc Id Source(s)
GWAS Catalog GCST009537 GWAS Catalog

RGD Curation Notes
Note Type Note Reference