GWAS625299_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS625299_H (macrophage inflammatory protein 1b measurement QTL GWAS625299 (human)) Homo sapiens

Symbol: GWAS625299_H
Name: macrophage inflammatory protein 1b measurement QTL GWAS625299 (human)
RGD ID: 406976323
Trait: macrophage inflammatory protein 1b measurement
LOD Score: Not Available
P Value: 2.0E-18
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38349,295,646 - 49,295,647RGD_MAPPER_PIPELINEGRCh38
GRCh37349,333,079 - 49,333,080RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS625299_HHumanmacrophage inflammatory protein 1b measurement  IAGPrs75394422405850206 GWAS_CATALOGPMID:27989323
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344173USP4ubiquitin specific peptidase 434927714449340053Human

Position Markers

Peak: (rs75394422)
Human AssemblyChrPosition (strand)Source
GRCh38349,295,646 - 49,295,647RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406976323GWAS625299_Hmacrophage inflammatory protein 1b measurement QTL GWAS625299 (human)2e-18macrophage inflammatory protein 1b measurement34929564649295647Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS625299_H GCST004433 Macrophage inflammatory protein 1b levels 8,243 Finnish ancestry individuals C NR 2E-18 17.699 rs75394422 0.3582 macrophage inflammatory protein 1b measurement (EFO:0008219)
 PMID:27989323
Database Acc Id Source(s)
GWAS Catalog GCST004433 GWAS Catalog

RGD Curation Notes
Note Type Note Reference