GWAS620908_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS620908_H (protein measurement QTL GWAS620908 (human)) Homo sapiens

Symbol: GWAS620908_H
Name: protein measurement QTL GWAS620908 (human)
RGD ID: 406971932
Trait: protein measurement
LOD Score: Not Available
P Value: 8E-193
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386168,417,484 - 168,417,485RGD_MAPPER_PIPELINEGRCh38
GRCh376168,818,164 - 168,818,165RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS620908_HHumanprotein measurement  IAGPrs4708738405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38638751LOC105378141uncharacterized LOC1053781416168413381168421327Human

Position Markers

Peak: (rs4708738)
Human AssemblyChrPosition (strand)Source
GRCh386168,417,484 - 168,417,485RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406971932GWAS620908_Hprotein measurement QTL GWAS620908 (human)8e-193protein measurement6168417484168417485Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS620908_H GCST90249583 SPARC-related modular calcium-binding protein 2 levels 10,708 European ancestry individuals T 0.28 8E-193 192.097 rs4708738 0.418 protein measurement (EFO:0004747)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90249583 GWAS Catalog

RGD Curation Notes
Note Type Note Reference