GWAS620634_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS620634_H (Uterine leiomyoma QTL GWAS620634 (human)) Homo sapiens

Symbol: GWAS620634_H
Name: Uterine leiomyoma QTL GWAS620634 (human)
RGD ID: 406971658
Trait: Uterine leiomyoma
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382236,287,509 - 36,287,510RGD_MAPPER_PIPELINEGRCh38
GRCh372236,683,555 - 36,683,556RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS620634_HHumanUterine leiomyoma  IAGPrs9610482405850206 GWAS_CATALOGPMID:36726022
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
732401MYH9myosin heavy chain 9223628128036387967Human

Position Markers

Peak: (rs9610482)
Human AssemblyChrPosition (strand)Source
GRCh382236,287,509 - 36,287,510RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
407178640GWAS827616_HFEV/FVC ratio QTL GWAS827616 (human)2e-08FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)223628750936287510Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human
406971658GWAS620634_HUterine leiomyoma QTL GWAS620634 (human)1e-09Uterine leiomyoma223628750936287510Human
406962652GWAS611628_Hplatelet count QTL GWAS611628 (human)4e-12platelet quantity (VT:0003179)platelet count (CMO:0000029)223628750936287510Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS611628_H GCST90002361 Platelet count 721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.280552 4E-12 11.398 rs9610482 N/A platelet count (EFO:0004309)
 PMID:32888493
GWAS620634_H GCST90239856 Uterine leiomyomata 38,466 European ancestry cases, 329,437 European ancestry controls T NR 1E-9 9 rs9610482 1.06 Uterine leiomyoma (HP:0000131)
 PMID:36726022
GWAS827616_H GCST007080 Lung function (FEV1/FVC) approximately 370,000 European ancestry individuals ? NR 2E-8 7.699 rs9610482 N/A FEV/FVC ratio (EFO:0004713)
 PMID:30595370
Database Acc Id Source(s)
GWAS Catalog GCST90239856 GWAS Catalog

RGD Curation Notes
Note Type Note Reference