GWAS620436_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS620436_H (femoral neck bone mineral density QTL GWAS620436 (human)) Homo sapiens

Symbol: GWAS620436_H
Name: femoral neck bone mineral density QTL GWAS620436 (human)
RGD ID: 406971460
Trait: bone mineralization trait   (VT:0002896)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381455,420,985 - 55,420,986RGD_MAPPER_PIPELINEGRCh38
GRCh371455,887,703 - 55,887,704RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS620436_HHumanbone mineral density  IAGPrs9635231405850206Based on the EFO term IDGWAS_CATALOGPMID:28181694

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS620436_HHumanbone mineralization trait  IAGPrs9635231405850206 GWAS_CATALOGPMID:28181694

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS620436_HHumanfemoral neck bone mineral density  IAGPrs9635231405850206 GWAS_CATALOGPMID:28181694

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1320823FBXO34F-box protein 34145527142155443049Human
1342829TBPL2TATA-box binding protein like 2145541421055440616Human


Peak: (rs9635231)
Human AssemblyChrPosition (strand)Source
GRCh381455,420,985 - 55,420,986RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406971460GWAS620436_Hfemoral neck bone mineral density QTL GWAS620436 (human)0.0000007bone mineralization trait (VT:0002896)bone mineral density (CMO:0001226)145542098555420986Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS620436_H GCST004177 Pediatric bone mineral density (femoral neck) 488 European ancestry female children, 445 European ancestry male children T 0.496 7E-7 6.155 rs9635231 0.240479 femoral neck bone mineral density (EFO:0007785)
 PMID:28181694
Database
Acc Id
Source(s)
GWAS Catalog GCST004177 GWAS Catalog

Note Type Note Reference