GWAS620436_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS620436_H (femoral neck bone mineral density QTL GWAS620436 (human)) Homo sapiens

Symbol: GWAS620436_H
Name: femoral neck bone mineral density QTL GWAS620436 (human)
RGD ID: 406971460
Trait: femoral neck bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381455,420,985 - 55,420,986RGD_MAPPER_PIPELINEGRCh38
GRCh371455,887,703 - 55,887,704RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS620436_HHumanbone mineral density  IAGPrs9635231405850206Based on the EFO term IDGWAS_CATALOGPMID:28181694

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS620436_HHumanfemoral neck bone mineral density  IAGPrs9635231405850206 GWAS_CATALOGPMID:28181694
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1320823FBXO34F-box protein 34145527142155443049Human
1342829TBPL2TATA-box binding protein like 2145541421055440616Human

Position Markers

Peak: (rs9635231)
Human AssemblyChrPosition (strand)Source
GRCh381455,420,985 - 55,420,986RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406971460GWAS620436_Hfemoral neck bone mineral density QTL GWAS620436 (human)0.0000007femoral neck bone mineral densitybone mineral density (CMO:0001226)145542098555420986Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS620436_H GCST004177 Pediatric bone mineral density (femoral neck) 488 European ancestry female children, 445 European ancestry male children T 0.496 7E-7 6.155 rs9635231 0.240479 femoral neck bone mineral density (EFO:0007785)
 PMID:28181694
Database Acc Id Source(s)
GWAS Catalog GCST004177 GWAS Catalog

RGD Curation Notes
Note Type Note Reference