GWAS620208_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS620208_H (pain QTL GWAS620208 (human)) Homo sapiens

Symbol: GWAS620208_H
Name: pain QTL GWAS620208 (human)
RGD ID: 406971232
Trait: pain
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382230,156,824 - 30,156,825RGD_MAPPER_PIPELINEGRCh38
GRCh372230,552,813 - 30,552,814RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
Pain  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Pain  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348799HORMAD2HORMA domain containing 2223007773230207456Human

Position Markers

Peak: (rs16988333)
Human AssemblyChrPosition (strand)Source
GRCh382230,156,824 - 30,156,825RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
406971232GWAS620208_Hpain QTL GWAS620208 (human)7e-09pain223015682430156825Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human
407302509GWAS951485_Htype 2 diabetes mellitus QTL GWAS951485 (human)9e-09type 2 diabetes mellitus223015682430156825Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS620208_H GCST90104572 Pain (pleiotropy) 361,194 European ancestry individuals ? NR 7E-9 8.155 rs16988333 0.023 pain (EFO:0003843)
 PMID:37844115
GWAS951485_H GCST006867 Type 2 diabetes 61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls G 0.09040354926268 9E-9 8.046 rs16988333 0.0745 PMID:30054458
Database Acc Id Source(s)
GWAS Catalog GCST90104572 GWAS Catalog

RGD Curation Notes
Note Type Note Reference