GWAS619749_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS619749_H (eosinophil percentage of leukocytes QTL GWAS619749 (human)) Homo sapiens

Symbol: GWAS619749_H
Name: eosinophil percentage of leukocytes QTL GWAS619749 (human)
RGD ID: 406970773
Trait: eosinophil percentage of leukocytes
Measurement Type: blood eosinophil count to total leukocyte count ratio   (CMO:0000369)    
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383112,355,761 - 112,355,762RGD_MAPPER_PIPELINEGRCh38
GRCh373112,074,608 - 112,074,609RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS619749_HHumanblood eosinophil count to total leukocyte count ratio  IAGPrs9990220405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS619749_HHumaneosinophil percentage of leukocytes  IAGPrs9990220405850206 GWAS_CATALOGPMID:27863252
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606033CD200CD200 molecule3112332573112362812Human

Position Markers

Peak: (rs9990220)
Human AssemblyChrPosition (strand)Source
GRCh383112,355,761 - 112,355,762RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406970773GWAS619749_Heosinophil percentage of leukocytes QTL GWAS619749 (human)2e-16eosinophil percentage of leukocytesblood eosinophil count to total leukocyte count ratio (CMO:0000369)3112355761112355762Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS619749_H GCST004600 Eosinophil percentage of white cells 172,378 European ancestry individuals T 0.4416 2E-16 15.699 rs9990220 0.02956545 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:27863252
Database Acc Id Source(s)
GWAS Catalog GCST004600 GWAS Catalog

RGD Curation Notes
Note Type Note Reference