GWAS616575_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS616575_H (hair color QTL GWAS616575 (human)) Homo sapiens

Symbol: GWAS616575_H
Name: hair color QTL GWAS616575 (human)
RGD ID: 406967599
Trait: hair color
LOD Score: Not Available
P Value: 2.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381528,266,851 - 28,266,852RGD_MAPPER_PIPELINEGRCh38
GRCh371528,511,997 - 28,511,998RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS616575_HHumanhair color  IAGPrs79097182405850206 GWAS_CATALOGPMID:26184321
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1317498HERC2HECT and RLD domain containing E3 ubiquitin protein ligase 2152811104028322179Human

Position Markers

Peak: (rs79097182)
Human AssemblyChrPosition (strand)Source
GRCh381528,266,851 - 28,266,852RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
406967667GWAS616643_Hhair color QTL GWAS616643 (human)4e-09hair color152826685128266852Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
406967676GWAS616652_Hhair color QTL GWAS616652 (human)5e-14hair color152826685128266852Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
406967599GWAS616575_Hhair color QTL GWAS616575 (human)2e-14hair color152826685128266852Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS616575_H GCST003023 Blond vs non-blond hair color 2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals ? 0.038 2E-14 13.699 rs79097182 2.9822 hair color (EFO:0003924)
 PMID:26184321
GWAS616643_H GCST003021 Brown vs. non-brown hair color 3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals ? 0.962 4E-9 8.398 rs79097182 2.07168 hair color (EFO:0003924)
 PMID:26184321
GWAS616652_H GCST003022 Light vs. dark hair color 3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals ? 0.962 5E-14 13.302 rs79097182 2.564103 hair color (EFO:0003924)
 PMID:26184321
Database Acc Id Source(s)
GWAS Catalog GCST003023 GWAS Catalog

RGD Curation Notes
Note Type Note Reference