GWAS612525_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS612525_H (venous thromboembolism QTL GWAS612525 (human)) Homo sapiens

Symbol: GWAS612525_H
Name: venous thromboembolism QTL GWAS612525 (human)
RGD ID: 406963549
Trait: venous thromboembolism
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386168,089,552 - 168,089,553RGD_MAPPER_PIPELINEGRCh38
GRCh376168,490,232 - 168,490,233RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352660FRMD1FERM domain containing 16168053095168093056Human

Position Markers

Peak: (rs9346649)
Human AssemblyChrPosition (strand)Source
GRCh386168,089,552 - 168,089,553RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406963549GWAS612525_Hvenous thromboembolism QTL GWAS612525 (human)0.000006venous thromboembolism6168089552168089553Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS612525_H GCST004068 Venous thromboembolism adjusted for sickle cell variant rs77121243-T 393 African American cases, 4,941 African American controls. ? 0.66 0.000006 5.222 rs9346649 1.5037593 venous thromboembolism (EFO:0004286)
 PMID:28203683
Database Acc Id Source(s)
GWAS Catalog GCST004068 GWAS Catalog

RGD Curation Notes
Note Type Note Reference