GWAS610855_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS610855_H (breast cancer QTL GWAS610855 (human)) Homo sapiens

Symbol: GWAS610855_H
Name: breast cancer QTL GWAS610855 (human)
RGD ID: 406961879
Trait: breast cancer
LOD Score: Not Available
P Value: 8.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385146,861,414 - 146,861,415RGD_MAPPER_PIPELINEGRCh38
GRCh375146,240,977 - 146,240,978RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS610855_HHumanbreast cancer  IAGPrs147384928405850206 GWAS_CATALOGPMID:35121771
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352838PPP2R2Bprotein phosphatase 2 regulatory subunit Bbeta5146580742147081520Human

Position Markers

Peak: (rs147384928)
Human AssemblyChrPosition (strand)Source
GRCh385146,861,414 - 146,861,415RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357314AASTH54_HAllergic/atopic asthma related QTL 54 (human)3.560.0003Reversible airflow obstructiontotal serum IgE5135892246150155845Human
406961879GWAS610855_Hbreast cancer QTL GWAS610855 (human)8e-08breast cancer5146861414146861415Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS610855_H GCST90104178 Breast cancer 4,046 Korean ancestry individuals G 0.017548 8E-8 7.097 rs147384928 1.80247 PMID:35121771
Database Acc Id Source(s)
GWAS Catalog GCST90104178 GWAS Catalog

RGD Curation Notes
Note Type Note Reference