GWAS610175_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS610175_H (gut microbiome measurement, taxonomic microbiome measurement QTL GWAS610175 (human)) Homo sapiens

Symbol: GWAS610175_H
Name: gut microbiome measurement, taxonomic microbiome measurement QTL GWAS610175 (human)
RGD ID: 406961199
Trait: gut microbiome measurement, taxonomic microbiome measurement
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,273,397 - 3,273,398RGD_MAPPER_PIPELINEGRCh38
GRCh37123,382,563 - 3,382,564RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS610175_HHumangut microbiome measurement  IAGPrs479105405850206 GWAS_CATALOGPMID:27723756
GWAS610175_HHumantaxonomic microbiome measurement  IAGPrs479105405850206 GWAS_CATALOGPMID:27723756

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602896TSPAN9tetraspanin 91230773793286559Human


Peak: (rs479105)
Human AssemblyChrPosition (strand)Source
GRCh38123,273,397 - 3,273,398RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406961199GWAS610175_Hgut microbiome measurement, taxonomic microbiome measurement QTL GWAS610175 (human)1e-08gut microbiome measurement, taxonomic microbiome measurement1232733973273398Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS610175_H GCST003875 Gut microbiota (bacterial taxa) 1,812 European ancestry individuals T NR 1E-8 8 rs479105 0.22 gut microbiome measurement (EFO:0007874)
taxonomic microbiome measurement (EFO:0007883)
 PMID:27723756
Database
Acc Id
Source(s)
GWAS Catalog GCST003875 GWAS Catalog

Note Type Note Reference