GWAS604606_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS604606_H (natural cytotoxicity triggering receptor 1 measurement QTL GWAS604606 (human)) Homo sapiens

Symbol: GWAS604606_H
Name: natural cytotoxicity triggering receptor 1 measurement QTL GWAS604606 (human)
RGD ID: 406955630
Trait: natural cytotoxicity triggering receptor 1 measurement
LOD Score: Not Available
P Value: 2.0E-75
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381954,906,696 - 54,906,697RGD_MAPPER_PIPELINEGRCh38
GRCh371955,418,054 - 55,418,055RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS604606_HHumannatural cytotoxicity triggering receptor 1 measurement  IAGPrs2278428405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348186NCR1natural cytotoxicity triggering receptor 1195489819854938208Human

Position Markers

Peak: (rs2278428)
Human AssemblyChrPosition (strand)Source
GRCh381954,906,696 - 54,906,697RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407138116GWAS787092_Hnatural cytotoxicity triggering receptor 1 measurement QTL GWAS787092 (human)3e-25natural cytotoxicity triggering receptor 1 measurement195490669654906697Human
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
407144222GWAS793198_Hnatural cytotoxicity triggering receptor 1 measurement QTL GWAS793198 (human)1e-15natural cytotoxicity triggering receptor 1 measurement195490669654906697Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human
406955630GWAS604606_Hnatural cytotoxicity triggering receptor 1 measurement QTL GWAS604606 (human)2e-75natural cytotoxicity triggering receptor 1 measurement195490669654906697Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS604606_H GCST90248750 Natural cytotoxicity triggering receptor 1 levels 10,708 European ancestry individuals A 0.92 2E-75 74.699 rs2278428 0.455 natural cytotoxicity triggering receptor 1 measurement (EFO:0020588)
 PMID:34648354
GWAS787092_H GCST90162297 Natural cytotoxicity triggering receptor 1 levels 2,935 Qatari ancestry individuals C 0.239523 3E-25 24.523 rs2278428 0.3251 natural cytotoxicity triggering receptor 1 measurement (EFO:0020588)
 PMID:36168886
GWAS793198_H GCST90242032 Natural cytotoxicity triggering receptor 1 levels (NCR1.8360.169.3) 3,301 European ancestry individuals C 0.081 1E-15 15 rs2278428 0.36 natural cytotoxicity triggering receptor 1 measurement (EFO:0020588)
 PMID:29875488
Database Acc Id Source(s)
GWAS Catalog GCST90248750 GWAS Catalog

RGD Curation Notes
Note Type Note Reference