GWAS602783_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS602783_H (eye color QTL GWAS602783 (human)) Homo sapiens

Symbol: GWAS602783_H
Name: eye color QTL GWAS602783 (human)
RGD ID: 406953807
Trait: eye color
LOD Score: Not Available
P Value: 7.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381528,265,480 - 28,265,481RGD_MAPPER_PIPELINEGRCh38
GRCh371528,510,626 - 28,510,627RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS602783_HHumaneye color  IAGPrs150568801405850206 GWAS_CATALOGPMID:36672889
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1317498HERC2HECT and RLD domain containing E3 ubiquitin protein ligase 2152811104028322179Human

Position Markers

Peak: (rs150568801)
Human AssemblyChrPosition (strand)Source
GRCh381528,265,480 - 28,265,481RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
406953807GWAS602783_Heye color QTL GWAS602783 (human)7e-14eye color152826548028265481Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS602783_H GCST90255684 Eye color 4,987 Iberian ancestry individuals T 0.0181699 7E-14 13.155 rs150568801 0.650865 eye color (EFO:0003949)
 PMID:36672889
Database Acc Id Source(s)
GWAS Catalog GCST90255684 GWAS Catalog

RGD Curation Notes
Note Type Note Reference