GWAS601275_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS601275_H (systolic blood pressure QTL GWAS601275 (human)) Homo sapiens

Symbol: GWAS601275_H
Name: systolic blood pressure QTL GWAS601275 (human)
RGD ID: 406952299
Trait: systolic blood pressure
Measurement Type: diastolic blood pressure   (CMO:0000005)    
systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38314,916,619 - 14,916,620RGD_MAPPER_PIPELINEGRCh38
GRCh37314,958,126 - 14,958,127RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS601275_HHumandiastolic blood pressure  IAGPrs11128722405850206Based on the EFO term IDGWAS_CATALOGPMID:27618452
GWAS601275_HHumansystolic blood pressure  IAGPrs11128722405850206Based on the EFO term IDGWAS_CATALOGPMID:27618452

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS601275_HHumandiastolic blood pressure  IAGPrs11128722405850206 GWAS_CATALOGPMID:27618452
GWAS601275_HHumansystolic blood pressure  IAGPrs11128722405850206 GWAS_CATALOGPMID:27618452
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1313708FGD5FYVE, RhoGEF and PH domain containing 531481068814934571Human

Position Markers

Peak: (rs11128722)
Human AssemblyChrPosition (strand)Source
GRCh38314,916,619 - 14,916,620RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
406952299GWAS601275_Hsystolic blood pressure QTL GWAS601275 (human)4e-11diastolic blood pressurediastolic blood pressure (CMO:0000005)31491661914916620Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS601275_H GCST006259 Systolic blood pressure up to 201,529 European ancestry individuals A 0.563 4E-11 10.398 rs11128722 0.3103 systolic blood pressure (EFO:0006335)
 PMID:27618452
None Available GCST006258 Diastolic blood pressure up to 201,529 European ancestry individuals A 0.563 4E-11 10.398 rs11128722 0.1732 diastolic blood pressure (EFO:0006336)
 PMID:27618452
Database Acc Id Source(s)
GWAS Catalog GCST006258 GWAS Catalog
  GCST006259 GWAS Catalog

RGD Curation Notes
Note Type Note Reference